Chr:
Chr1
Start:
41818110
End:
41819616
Strand:
+
Ref_name:
OSA-LNCN0886
Sequence
(OSA-LNCN0886.1):
CCACUUGCCAUGAUCGCUGGCCACCGGCUCACCGCUCAGGUGCUCAGCACGGCAUGGUAGCACGCCUCAUCGAGCAGGAAUCGCUGAUUGCAGGUUGCGGCAUCAAGGCAUCAAGCCCUCCACGUCUCCUCCCUUUUUCUGCAUUGUGAUGGGUUUGCAAUUGGGGUUAUAGUUUUGCUUAUUGAAAAGAAGGUCUAAAGAAUUUGGCGGGACUUGAGGAUCAGGAGUUUAACUAGUACUGAAAUCAUGUCAAGUAAGUCAUCAAUUUUUUUCCCGAUCUAAUUAGCAUUUUUUACAGGUUAUUAUCGUCUCAUCAAGAACUCAGCUUAAUUAUGUAUUUUGCCCAUUGCUAUGUAGACAUGUACUACCGGAUUUUUCAUUUUAAUAAGCAUUUUUUGUCAUUGUAUAUGUUACAUUUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.97%
ME_num:
MEP:
10.98%
HE_num:
HEP:
65.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.58
Avg Expression:
44.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.02575489769943 | 0.00176610500686224 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.7598077520788 | 0.00378265250341228 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.37309383457076 | 0.000253236838257499 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.98189149335163 | 3.39318759943288e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.91352639808046 | 4.45987027757761e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.88479218747931 | 0.00323214569523499 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 4.82226444015044 | 0.0052239057531394 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.00482110669822 | 0.00119665610463953 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.5666150659811 | 0.000253995609882285 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.09165017816777 | 7.13656632312183e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.98883577073943 | 0.000840154088507258 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 3.70004075471651 | 0.0302548183783005 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 3.69993796641615 | 0.030577041169154 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 3.69986422651237 | 0.0303087203910599 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.62375541555808 | 0.00628429488981874 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.86534993335754 | 0.00100586782373173 |