Chr:
Chr1
Start:
41302805
End:
41305279
Strand:
-
Ref_name:
OSA-LNCN0880
Sequence
(OSA-LNCN0880.1):
GGGUAAAGGAAGGAAGCAGAGGCCCACUCAACCACAUGUUGCGUGGACCACAACGGCCCAAAGUCCGAGGCCCAUAUUAAACUCCCCCACCGCGUGGCGUGCGCCGUCUUCCUCGAAUAGGCGCGAGGUGGAGGAAGGGCCACCGCCUUAUUCUCCGCGACGCCUUCCUCCAAAAGUAUCCUCUCGCCAUCUCGCCGCCUCCCCGCGCUGCCCCCUCUCUCCCUCUCCCUCCCUUCUCCGCUCACCUCUCCGUCCGAAUCCAAUCCAAUCCAAUUCAACGUGAUGCUGCUGCUAGUAGUAUCAGAGCUCUACAUUGAAAGAUUGCAUCUGAUUAGGACGGUUCAGGCCAGGUUGGACAAACUAACUAGGUUGUGCACCUUCCAUGAGCUAUCCAUACAACAUUAUCUCUAGCCGAGUAUAGUACUCACAUGCAACAGGCUGUGUUAUUUGCUAAUCAAGGGUCUACCCUGAUGCUACCUUCUGCAGUGUUGUUAGCUGAACACAAAC
Sequence
(OSA-LNCN0880.2):
GGGUAAAGGAAGGAAGCAGAGGCCCACUCAACCACAUGUUGCGUGGACCACAACGGCCCAAAGUCCGAGGCCCAUAUUAAACUCCCCCACCGCGUGGCGUGCGCCGUCUUCCUCGAAUAGGCGCGAGGUGGAGGAAGGGCCACCGCCUUAUUCUCCGCGACGCCUUCCUCCAAAAGUAUCCUCUCGCCAUCUCGCCGCCUCCCCGCGCUGCCCCCUCUCUCCCUCUCCCUCCCUUCUCCGCUCACCUCUCCGUCCGAAUCCAAUCCAAUCCAAUUCAACGUAAGCUCCCUCCCCCGUUCGCGCCUCUCUCCAAAUCGCGUGAUGCUGCUGCUAGUAGUAUCAGAGCUCUACAUUGAAAGAUUGCAUCUGAUUAGGACGGUUCAGGCCAGGUUGGACAAACUAACUAGGUUGUGCACCUUCCAUGAGCUAUCCAUACAACAUUAUCUCUAGCCGAGUGUGAGUACCUGUCUGGAUUUCAGUUCUGCUGAUAAUAUUGUUUGAAGGGAUUCUUAUGGAAGUUCAAUGUCACAUUCAAACAGCAAAAGUAUCACAGAAAGUGAAGGUCUGGAUAAUGUUGGGUGUGAGUGUGACUGUCAAUAGUAGGAUGUUUUCUUAGGAUGUUAUGAGGCUUAAAACAUAUAAGGGGCUACAUUCCAGUAAAAAGUUCAUUAUUGAGCUGUUUUUUUUCCUUUGCUGACAUGAUAAUUACGUUACUGUAGCAGAUCAUGCUCGAUUGCUAUAAUAUGCAGGAGCAUGGCAUUGUCUGCUUGCGGUUUGCAGUUUUCCUAUCAAUAUGCCUGUUUGUUACCUCGUCAGAAGAAUUUUGCACUAUACAUUGGUUCUGACCCCACACUUAAUGUUACUACUUUCUAUCUGAUGCGCCAUCCCACCGAAUGAAAACUGUGUCACAUCUUAUGAAAUCUCACAGCUCCACUCUUACUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.66%
ME_num:
MEP:
45.73%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.80
Avg Expression:
1.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.74578250114004 | 0.0236030701213438 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.35747342071797 | 0.00234372210066765 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.25530191285283 | 0.0285907118509304 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.0704294866046 | 0.00352585268345102 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.22502726405366 | 0.00130718319901985 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.91474724483561 | 0.000313306152848294 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.2312975005484 | 0.014323186350238 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.72982613872603 | 0.00138267819270788 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.73810348915424 | 0.000744600245043678 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.90740476113097 | 0.000427097475917807 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.56545520301377 | 0.000751460559658323 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.65796940664058 | 1.04863008756494e-05 |