Chr:
Chr1
Start:
41256559
End:
41257051
Strand:
-
Ref_name:
OSA-LNCN0879
Sequence
(OSA-LNCN0879.1):
CAACAUUUGACAAAACAAAAGUAAGUACCAAAUUGAAAAUUUAGAAAAACCAAAAUGACAAUGACAAGAAUGAAAACAAAACGAUCAUAGAAAGGAACAUCAAAUCGCAUAAAUUCAACAAUGAGUAUCGUGUCAAAAGAUUUAGAAUUCCAGAAGUACCAAGCAUGAAACCAAGAAAAUGUUUUUCUUUUUUUUUCAAUAGAAGGUACACCAAAUUCUAGAAAAAACGAAUUGUAUGUUCAAGCUAAAAGCUUUAGAUCCCAAAUAGAAGCAAGAAACCAAGACACAAUCUUUCGGAAAACCAAUAGUAAGACUAAGUUCAAGAUUAAGAACCCAAAUACAAAUGUCAAACAGGGAAACCAAAAUAAUUUCUUCUUGCAAAAGCAAACAUAAACUAAGGAGAACUAAUUAUAAGUACCAAAUUGAAAAGCUUUAGAGAAUCUUUUUUCUCAAUACAAGGUAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.18%
ME_num:
MEP:
7.72%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.97
Avg Expression:
10.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.87370466687172 | 3.75790067496313e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.2178731834445 | 4.60410587314365e-17 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.99817250238672 | 5.80822450398039e-17 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.13757019371733 | 4.41005118602677e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.07802990611521 | 2.24632837327693e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.38798662451353 | 2.74924266847111e-15 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.67140290819668 | 9.04281074780084e-25 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.86172088793518 | 5.30925769223276e-25 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.86375559742342 | 1.97001816549436e-17 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.43634349505833 | 9.79008143896014e-18 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.94345124985276 | 3.07253245786324e-34 |