Chr:
Chr1
Start:
40737317
End:
40738006
Strand:
.
Ref_name:
OSA-LNCN0872
Sequence
(OSA-LNCN0872.1):
GAACAGACGAACGUGCCAUGGGCUAUGCAGCUAUAGCCUACUAAUAAGUCUAUGACUGGGCCAUGUCUCUCAUGGAAAGGAAAGGUGGUGCCACAGGGAAAAGGGGUGAUCCAUUUGUGCCCAUUUAAAAGGAACUCAAGAUGAGUGUCAAGAUUACUACUCAAGCUCUAGUCUGUAAUGUGAGUGAGACUCCUAUUAGGUUCAGGAUAUGAAGCUCUUGUUCCAGUGUCCCUGCUGCUCAUGCUUCUGCGUCAUGAAGGCAAAGAAGAACAGCAGCCAAGGCAAGGAAGGAGGAGGAGGAGGAGGAAGCAAAUUGCAAGGGGGAUCAGUCAUGGUGAAAAACUGAAAACCACAGACCAUUAGUAGCUUCUGUUGAUCCCUGUCUUAAUUUGGACCAUGUGCAUGUCCAGUUAGUUUCUUCGGUUCAUCUCUGUUGCUGCAGCAGUUUGGUAGUUAGUUUUCAUGUGCUGUUGAUUGCUGCUGCCACUCAUCUGGCCGGCCACUGUCGAUCUCCGAUCUUGAUUUUUAAGUCUUUAUCUAGAUUUUGUUGAUGUAUCUACUAUAGUCAAAUAAAAAGGCAUCAUUAUUUACCUUAAUUAGAGUUUUGUCUGGAUUUCAUCCCUUGAUUUGUUUCAAGUUACUACCUUGUUAUCCCCCCUCCCCCAGCGCAUUGGUAAAGCUGUGGUUAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.07%
ME_num:
MEP:
35.57%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.91
Avg Expression:
20.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.13096050881766 | 0.0198423272506704 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.02430510130581 | 0.0446090478831565 |
| 3 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 8_days_after_shift | -2.86216024065485 | 1.04716697499576e-07 |
| 4 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | -3.93817285228606 | 5.25553068931236e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.01821187023079 | 5.50725855607613e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 7.15273190724613 | 2.3121833890687e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.44067245798596 | 0.0135902042909006 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 8.51910315822474 | 4.07363599585921e-12 |