Chr:
Chr1
Start:
40372945
End:
40377770
Strand:
-
Ref_name:
OSA-LNCN0867
Sequence
(OSA-LNCN0867.1):
AUUUAGAACAGCAUUAUGAUUGUAGAGAUAUAUCGGCUAAGACAUGAGAUCAGACCUAACCGAGACAGUCCCAACUAAACCGAUGCGUCUCUAAACACAAUGCAAUUAGAGAUAGAAUUGAGAUAUCAGGGAGGCAAAUAUAUCAACCAAACCAGAGCGAUCCAAGAGAUCGAAUCGAUGCAGCCUUGAACAACACCAACGUAGCCGACAGAUUCACCAGGGCCUGACAGAACGUAGGACUUACCCCUUCGCUGGAGAUCGAAAGCCGAUGCAGCCCUGCGUCAGGUGCCCAAGUUCCACCGAAAGAUAAGUAAAAACCUCAGGGAAGAGGGUGGCGAUGCGCCGAGAGUAUUAUUGAUCGAUAGAUUGAUAGAUUACAAUGACCUCGGGUGUACAUAUUUAUACCCAUAGGGAGAUACUAGUCCUUGUCGGACAAGAAAGAAACUAAAAAGGAAAAGAUAAAGUCCUUAUCGGACACUAAACACACUUUCCUAAAGAUAAAAGGAAACUAACAAACUAUACCUAAUUAAUAGAUAAUUGUCAUGUCGCAUCCUUCUUGAACUCAAACUCUUCUAGAUAAGCUUCUUUUGAUUGAUCCGACUCCACCAAGAACACGACAUCGUGGCGACUUGACUCCCAUCGGCUGAUUCUAGAACUUUGAAGCCGAUACUGACUCUAAACCGAUGAUAACUUUGGGCUUACCAAAUUUCACUGUUAACAGUUUUAGAGUUCAUUAACUCGGAAGGUCGUCUGUGGUUUUCCGCGGGCAUUGCUGCUUUUGGGGGUUCUUUGGGAGUGUAGUGUGACUCUGGCUCCACCACUCCACCCUCCCAUUGUUUGGAGUAGCUUUUUUUUCCGCAGUAGCUUUCUCCUUCUUUAACCUAGCUACAGCUUUGGUUUUUUCUUUUUCUCCCUGUUAGAGUAUAUGGAUAAGAUCAUAUUGUAUCUAGUUUGUUAUGGUAGGAUAGGAUUAGUUUCCAUCUCUAUCUAUCUAGGUUUACUUAAGAUCCAAUCAAUGUACUCCUGUAUAUAUCGGCUCCUGAGGCUCAAUACAAUAUAAACAACGUUACGCAGUAUAUCUCUCAUCUUGUGCUAUCCAACUCUUUCCCUCUCUGGCAUAGGCGUGUCUGGCCGAUUACGUUGCUUUCGCGAAAAAAAGAGUAGAAUAGGCUAAAAGGCAACGCGUUUAGGGGCGGCCGUUUUGCCUUUUGCCAGAUGCUGCCUUUGCGUGCGAGCUCUCUGCAGGCAGGCAGACAGAAACCAGAGCUCAAUGCUGCAAAGAAGAAUCUGAGAUUUACUUUGCCGUUUAGGUCACACGGAAAACAUCGAAAACAAACCAGACAAAAUUUACUAAAAAAUUAAACUUCUGUUCAAUUUUAUUGAACAUAGUUGCAGGGUCAUUAUCGUUACCGCGCCUAGCAAUAAGCUUUGGUUACCUUAGUUCGAUAAUAUGCAAUUAGCUAGUGGCCAUUGAACAGAAUAGCCGUGUCCUAUGGAGAAAAAGAAACAAAGAAGAAAACAAAUACUAGUAGCAGUUGUAAAUUUGUACAGGGCUAUCUAGUACACGUCACCUGAUACGGAUAUACGACACUUGCAUUGACAAUUUAUUCAAUAGGACUACUUAAAAAAAAGAGUGAGACAUCAUGUACAAUAGCAAAGCUAUCAGCUAGCUAUAAACAAUAGAGGAGAGAGAAGCAGCAGGCUACAGAUUUAUAGCCAGUUGUAAUACGAACUUUAAGACACAAUGUGUAUGACAAGUAGGACCAUAUAUUAAUAGUGUAGUAUGUAAUUAUUGUAUGAUUUAGCUAUUAAAUUGACUAUAGAUAAUUUGAAGCCAGUAGUUGGCUGUACUAUUAAACUUGCUCUCACAGAAACGAAGGUCUCCCGUCAAUCGAAAACGACCAAUUAAACUAUCUCCCGAUCGCUUUUGACACGCAAGCACCACUCCUUGCGCCACAUGCUGGUUGCUCAAAUCCAGUGAACAAGCUCAAUCACUUGCAUCGCUUUCAGGCACAAACGCGCAGGAUUGUCGUGCGGAUCGAUCGGUGUCUCGCCACUAGCAGACACGCGCGAGUAGUCACCGUAGCAAAGUCGCAUCGCAGUGCUACUGCUCAUGACGCCAACGUCUCACCGUGCAGCCUCGCGAUCACCAUACUUAUCAAGAAAAAUUGGAGAUUCAGAGUCAAGAGAUUGAGGCCAUUGGAGAGGAGAAACUCGCAAAUCUACACUCCUUUUAAAUAUCUUAAUUGUGAUGAUGAGCGAUAAAUCUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.17%
ME_num:
MEP:
44.92%
HE_num:
HEP:
6.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.80
Avg Expression:
3.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.90406923104707 | 1.10277197775321e-16 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.22403676203853 | 8.45530983988067e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.212932332846 | 1.07206814537618e-25 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.06609254585592 | 3.21697890640354e-18 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.43307257188426 | 2.29093496539309e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.31749981685494 | 7.7762734806742e-28 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.0167447169469 | 0.00261667814084411 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.44852201760772 | 0.00229795901598499 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.3624140474814 | 0.00151630831457463 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.06367721830122 | 4.29387298827881e-21 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.69264593733296 | 9.35870949226543e-20 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.11174472322626 | 0.0217522401801504 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.3214812417725 | 0.000999538031734764 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.66204854969867 | 0.0266345502954772 |
| 15 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.65106694752147 | 0.0307308900337871 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.56625788165092 | 0.0251872951455661 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.65096268106596 | 0.0309229687230157 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.65087117353042 | 0.0307904268614759 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.86390452995553 | 5.42977131293173e-29 |
| 20 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.16534438035786 | 0.00647878875055639 |
| 21 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.61283129816669 | 4.26555622740072e-27 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.39143516826189 | 6.65340933387393e-37 |