Chr:
Chr1
Start:
39516044
End:
39518138
Strand:
+
Ref_name:
OSA-LNCN0854
Sequence
(OSA-LNCN0854.1):
AUCAGAUUCAGAGAUCGAGAUCGCCUGCGUUCUGCGAGAUGGUGGGGAGGGUGGUGAAAAGGCCGGGGGGGCUGAAACGAAGGGAAAGAAUGACAAUACAGGCUUGCAGCAGAGAUAAGGAUACCUACUGUGGAUAAAUACACAGAAUAUACACGUCGACGUGACCGGACAUCCGUCGCCUCUUCUUGCUCUCCCUAGCGUGGGCCCCACUGCCCUCGUAGCUACAGUUCCGCGCCGGCGCACCGCCUCGAUCUCAUCUCCCCUCACUUCGGCUCCAGGCCCAAGCGGCCAAGCCCAAGCGCGGUGAUCUUCUGCGAUUACUGUGCAUGUUGCAUUGCGCGAAAAGGAAACAGCUGCCUGGGAUCGCAUGCUUGGGUAGCAUAGGACCGCAUAAUCUUUUGAAAAAAAUAACAGCCAAUUUUUUUAUUUAAAACUUAUUUUUGAAGUUGGUUUUAAGGUGUUUUUACCAUAGUUUAUUUUCACUUACAGUAUUGGUUUUCAAGUUGCUAGAAAUAUAUAUAUGUACAUAAAUUUUAUACACAAAUUACAUUUUAUUACUAAUAAGCCGUUAUGGCUUAAUCAAAUUUUAGUCUACUGAUAGGACAGAUAUUAGCACUAGCCCAUUUUACAUUAUAUGUCUUGAGGAAAUCUUUGAGACUGGGGUUUAAAGCACUUUUAGACUUGUUCAUGAAAUUUAGUUACAUGAAAAAGCUUAGCCAACACGGACUUGUUUACGAAAUUAUUUGAGAGCAUAAAUAAAUAAAAUACAUAGUCUUAUAGGAAAUGCUUAUAUAUACGAGUACGGAGUAUGCAACAACUUCCUUUAAAAAAAAAACAGAAUCGCUCCGGAGACCUCAACAAUAUCACAGUAACAAAAGAAAGAUUAGAGAAUAUCUAUAACUAAUAUAAAUAUUCGUAUUUUUUCGAUCGUCACAUCUAAUUUUCGUCCGUUUUUCGUCCAUACAAAAUCCGAUUCGGUUAGCAAUAGCCAAGGAAAAAAUUGCAAAAAAAAAGAAUCGGCGGCCGCCGACGCCACUGCCACCGCCGGAGGGAGAAGAGAGGCGGCGGAGGGAGCGCCGAUGCCGGAUCCGCCCGCGGUGGCCGCCACCGCCAACGGAUCCACCCUCGGACGAAGCCGACGCCGUCGUCGCCGCCGUUGAGAAGGCGCCAUCGCCGUCGAGGUCGACGGGGAGAGGGAGAGGGAUCCAUCCGCGGCCACCGCCGACGCCGCCACCACCCGCCGCCGGAUCCAUCGCCGCCGGAUCUAGGUCGGGAGGGAGACGAGAGGGGAGGAGGGAGCCGCCGCCGGCGGCGGCCUGCGACCGCCGCCACCGCCAACGGACCCACCCGCCGACGCCACCGACACCGCCAUCACCGCCGGAUCUAGGGCAGGAGGGAGGUGAGAGGGGAGAAGGGAGCCGCCGCCGCCGUAUCCGCCCGCAGCCGCCACCACCACGACCGGAUCCACCCGCGGGUACCGCCGCCGCCGGCCCGCGGCCGCCGCCACCGCCGACGGACCCACCCGCCGACGCCGCCGACACCACCAUCGCCGUCAGAUCUGGGAUAGGAGGGAGGCGAGAGAGGAGAAGGGAGCCGCCACCGCCGUAUCCGCCCGCAGCCACCACCACGACGGCCGGAUCCACCCGCGGCUACCGCGCGCCGCCGCCGCCACCACUGGCGGAUCUGCCGCGGGAGGGAGCCGCCGCCAACGCCGCCCCCACCCUCAGAUCCGCCGCGUCCGCCACCAACCCGCCGCCGCCGACCUGAGAGGGAGAGGAGUAGGGGGGCGCCGCCGCCGUCGCUUUGAGAGAGGGGAUCGGGGGCGCCGGUCGCUGCUCCGCGCCGCCGCAGCCGCUCGAGGAAGGAGGGGGGCGCCGCCGCCGUCGUCGCUCGGGAGGGGGGAAAUGAAUCCUAGGGUUAGGGUUAGGGUUUGGGUGUAUUUAUUUAGGUUAGGAUUAAUCUGGACCGUCCAUUCGAUCCGACGGCUGUAGCUGCUCCCACGUCGGGCCGCCGGCCUAUUGGGCCACCGAAUGGAGGACGUAAAAUAGACUUCAAUGGAGAAGAAAACCGGCCAGACACAUAGAAUAAAAGGGAG
Sequence
(OSA-LNCN0854.2):
AAAAGCUUAGCCAACACGGACUUGUUUACGAAAUUAUUUGAGAGCAUAAAUAAAUAAAAUACAUAGUCUUAUAGGAAAUGCUUAUAUAUACGAGUACGGAGUAUGCAACAACUUCCUUUAAAAAAAAAACAGAAUCGCUCCGGAGACCUCAACAAUAUCACAGUAACAAAAGAAAGAUUAGAGAAUAUCUAUAACUAAUAUAAAUAUUCGUAUUUUUUCGAUCGUCACAUCUAAUUUUCGUCCGUUUUUCGUCCAUACAAAAUCCGAUUCGGUUAGCAAUAGCCAAGGAAAAAAUUGCAAAAAAAAAGAAUCGGCGGCCGCCGACGCCACUGCCACCGCCGGAGGGAGAAGAGAGGCGGCGGAGGGAGCGCCGAUGCCGGAUCCGCCCGCGGUGGCCGCCACCGCCAACGGAUCCACCCUCGGACGAAGCCGACGCCGUCGUCGCCGCCGUUGAGAAGGCGCCAUCGCCGUCGAGGUCGACGGGGAGAGGGAGAGGGAUCCAUCCGCGGCCACCGCCGACGCCGCCACCACCCGCCGCCGGAUCCAUCGCCGCCGGAUCUAGGUCGGGAGGGAGACGAGAGGGGAGGAGGGAGCCGCCGCCGGCGGCGGCCUGCGACCGCCGCCACCGCCAACGGACCCACCCGCCGACGCCACCGACACCGCCAUCACCGCCGGAUCUAGGGCAGGAGGGAGGCGAGAGAGGAGAAGGGAGCCGCCACCGCCGUAUCCGCCCGCAGCCACCACCACGACGGCCGGAUCCACCCGCGGCUACCGCGCGCCGCCGCCGCCACCACUGGCGGAUCUGCCGCGGGAGGGAGCCGCCGCCAACGCCGCCCCCACCCUCAGAUCCGCCGCGUCCGCCACCAACCCGCCGCCGCCGACCUGAGAGGGAGAGGAGUAGGGGGGCGCCGCCGCCGUCGCUUUGAGAGAGGGGAUCGGGGGCGCCGGUCGCUGCUCCGCGCCGCCGCAGCCGCUCGAGGAAGGAGGGGGGCGCCGCCGCCGUCGUCGCUCGGGAGGGGGGAAAUGAAUCCUAGGGUUAGGGUUAGGGUUUGGGUGUAUUUAUUUAGGUUAGGAUUAAUCUGGACCGUCCAUUCGAUCCGACGGCUGUAGCUGCUCCCACGUCGGGCCGCCGGCCUAUUGGGCCACCGAAUGGAGGACGUAAAAUAGACUUCAAUGGAGAAGAAAACCGGCCAGACACAUAGAAUAAAAGGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.44%
ME_num:
MEP:
50.41%
HE_num:
HEP:
21.95%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.80
Avg Expression:
16.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -11.0752798128345 | 5.37060358163953e-14 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.61428884898726 | 5.15257337588558e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.17238796078718 | 0.000119230057296215 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.80421042304068 | 0.000252110587661641 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.79354657504349 | 0.000209350884673511 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.0180395455223 | 0.0163796812701457 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.28108479943391 | 4.26521034226922e-11 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -12.5173499048407 | 4.91885090688505e-19 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.24275190386853 | 0.00335788806380811 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.03550279741768 | 2.23621279968492e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.20690294721486 | 0.00043454537883929 |
| 12 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.36753718411351 | 0.00535875603121378 |
| 13 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.36744385179966 | 0.00543007776765929 |
| 14 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.36729335370469 | 0.00539621768315113 |
| 15 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.50413321627588 | 4.05981137542728e-08 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.06670912642062 | 0.0312550059355289 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.13836207710007 | 0.0152306420778916 |
| 18 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.06886814228322 | 5.99703204405802e-07 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.35302086616036 | 3.87354088646553e-05 |