Chr:
Chr1
Start:
39305673
End:
39316042
Strand:
+
Ref_name:
OSA-LNCN0848
Sequence
(OSA-LNCN0848.1):
AAGAAAUAUGCUGGGACACCUUUUAAGCAAACAGCAUAUCCUUUAUUUCCCAACAGAUUCAUAAGUGAAAUGCAAAACGAACAAGAAAAGAUAGAGCACGCACAAAGGUACUCCCUCCAUUUCAUACUAUAAGUCGUUUUAACUUUUUUCCUAGUUAAACUUUUUAAAAUUUGAUCAAGUUUAUAGAAAAAUAUAGCAACAUUUUCAACACAAAAUAAACAUAUUAUCAAAAUAUGCUCAAUGUUACAUUUAAUGAAACAAAUUUGGUGUUGGAGAUGUUGCUAAUUUUUUCUAUAAAUUUAAUCAAACCUAAAGAAGUUGACUAGGAAAAAAGUCUAGGCGACUUAUAAUAUGAAACAGAGGUAGUACAUCGGAUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.2%
ME_num:
MEP:
24.19%
HE_num:
HEP:
13.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.92
Avg Expression:
16.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.17330571001888 | 0.0268865709094411 |
| 2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -4.74700888418471 | 0.0350454241110932 |