Chr:
Chr1
Start:
39090953
End:
39096212
Strand:
-
Ref_name:
OSA-LNCN0845
Sequence
(OSA-LNCN0845.1):
GCGCUGCUUCACUUGGUCGGCUUCGUCGCGGCGGAGGCGCGGUUUUAUAGCGGAUUUAUGGGAAGAGCCGAAGAAGCUGGUAGGAUUGGAUCAGAUGUGCCUGCCCGGUGGGUCCCACACGGGGUGGGCCCGCUGUCAGCUACUAACGAGUCAACUGUCAACUAGAAACCCUGCUAUUACUAAUAUCGUCGAGGCAUUCUUCGGUUUCGAGGGGAUUGUGGGGGAAUAAUUCUACACCACAAUAGAAGUAGAAUAAAUCCCCUCCAAUCUCUCCCUGAUAAGGAUUAACUGAAUGAGGUUUGAUGGUGUUUGUCACCUAUCCUAUCUUAGUAUAAAGUUAUCCUCCACUAACUCUUUAAGCUUAACAUGCAAAUAUGCCACAUCAUCAUCCACUAACAAUCAUCACAUUUAAACAUCAUGCAAACAUGCUAUAUCUUUGUAUUUUUAUAAUUUAAGAGCUUUUCAAAUACAAACAUGUUAAAUUAUCAUCCAACAUAAUUCACAUAAUAUUUCAAUGUAUAUUUUUAUUAUGUUUUAUGAUAUCCUAUAUACUUAUAUAGUUCAUCCUCACUUAGUUAGUGCUUAAAUGAUUAAUGGUCCAAAUUAUCUUUCUCCUUUUUUCCUCUAAUUAAGUUAUAUCACAUCAAUUGUUUUUAGCCUUUAGAUGAUUAAUCUACGGUUCAAACUAUCUCCCUACUUUUCUUCUUCCAUAAAGUCAUACCACCUUACUUUUUACAUUUGAAUCACCAUUCUACAUACUAUUUAAAUUUAAAUUAUUAUAAACCAUAUUAAUUUACUUAAUCUGAUGUUAUCUACCUAUUUUACACGUUAUUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
35.57%
ME_num:
MEP:
55.08%
HE_num:
HEP:
9.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.86
Avg Expression:
10.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.04330645801566 | 3.73931222205793e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.66422151855754 | 0.00119886599222324 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.16881860223631 | 1.65866959971656e-16 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.76958993088661 | 0.00164233513048635 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.49702031102917 | 3.34864612047929e-18 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.29608475561017 | 2.33333477971305e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.53485282931576 | 0.00144289695070756 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.35367064647135 | 6.08745115419126e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.35505672455467 | 1.22618028257437e-08 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.77098037305694 | 0.00344996286674551 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.72633649222496 | 0.000717704694792695 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.38160397300338 | 0.00288941692577906 |