Chr:
Chr1
Start:
38908930
End:
38909935
Strand:
-
Ref_name:
OSA-LNCN0842
Sequence
(OSA-LNCN0842.1):
CUUCUAAAUUAAUAUGUUUUCAAAAACCAGAUUUAGCAAUCUGCACAAACAAUUCUUUGAUCCAAAAGAACAAAAAAAAUCAAGCUUUUUUCCCCUUACAAACGGAUGCAGGACAAGAUAGCUCAGUUCCCUCGUUACAUUACAGAGCAAACCGACCAAUAUAUAUCUGAAUGUUUUAGCACAGAAUUAACCAACAGUCAAAUCAAAUUGGAGUCUGAAUUCAGAACAGAUGCUUGCACCGAUCAUCAGUAGCUUAAUUUCUCACGUUGUGUUCAUCUUUAUGUACACAAAUGUUCAGAGGCUACAGAUCACAUAACCUAUCCAUCUAUAGAAGGAAGAAAAAAAAAUGGUGUCGUAAAUUAAGAAGAAAAAAAAAACAGCUACAAAAAUCGCUCGGAGACAUCUCGUCGAUCGCUUCUUGAAUCUAUCUGCGCGUGGAUGAGUUGAUCAGUGUCCCGCGCCACCUGCGCUGGGCCCCGAUGGCAGCAUCUCCAUCAGCGUCGACACCGCCGCCUUGGCCGCCUCCAACGCCGACGACGACGACGGCGACGGCAACGCGGGGCUCGGCGGCAAUGGCCUCGCGGCGUCGGCGCGUCCGGCGAGGCUCGCGGCGGCGAUCGCCGCGAGAACGACGGCGAGCAGCAAGUCACGGUGCAGGUGCACUGGUGCAGAGAGGAGAGGUUGGUGCACCGGCCUUGCUGCAAGUCUGCAACUUUUGGUUGUUUGAAAUGUGAAGAGGAGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.14%
ME_num:
MEP:
47.76%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
5.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.80779248862783 | 0.00957158338747793 |
| 2 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;_mock_inoculated | -1.99858896251633 | 0.0435147705527895 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.54308405068634 | 0.000412330215736484 |