Chr:
Chr1
Start:
37279716
End:
37280652
Strand:
-
Ref_name:
OSA-LNCN0814
Sequence
(OSA-LNCN0814.1):
GUUGAGGGAUCUUCGGUGUACUUUUCCAGGCUACUACUCCUAGUCUAUAGCAGAAGGUUUCAGCCCAGAGAACGUAAACUCAAGCCCAUAUUAAAAGCAUUAGGCCCACUAAAUCUUACUAGAAGCCCAUCAUCCUGGGCCGACGACUAUCCCGCAACUCAUUGCUCGCCUUGUCCCGUUGCCCUAUUCCACUCCAAGCACCAAGCAGCGCCUCAUGGCGGCGGCCGCCGGGGACGGUGAGGACGCGAAGGCGACGCGGCAGCCGGAGCAGCAGCCGCCGCUGUCUGGGCCCGGCAAGCCAACCUCCGGCCCGUGACAAAGUAAGCCCCCGCAGCUUGAAAAGAAAGGUUUACAUGUUACAAAACAAUUACUGCAUCAUUUGAGCUCGAUGCAAUGUUUGGUUCCUUGCUUAGUAGUAGGUGAUCCUAGAUUGGGAGGAGAUAGGUGAAAUGGAGAAUGCUAAGUGGCCUUUGGAAAUUCAGUGCUCGUACUCGAAACCAUUCUGCCAAAGGUUUAGAUUUUUGCGAUCAAUGUAUGAUGAUCAUUCCCACGAGCGAUUUGGGUUUUUUUGUUGUCACCAAAACCCAUCUUUGAGACAUUUGCAUCAUCUCUGUAUUUCUCACAUUUUAGAGGAAAGACGGUCACCCACCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.72%
ME_num:
MEP:
11.79%
HE_num:
HEP:
55.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.78
Avg Expression:
34.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.02435105881946 | 3.69959898541e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.34401130056245 | 1.89857512488852e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.22672676299154 | 5.14004249399485e-10 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.43607242049987 | 0.00279026458540816 |