Chr:
Chr1
Start:
37059574
End:
37065163
Strand:
+
Ref_name:
OSA-LNCN0813
Sequence
(OSA-LNCN0813.1):
ACGGCGGAACGAGGACGAAAGGAUGAUGGCUCAUAAACUCGGCGGUGGUUGUUGUGGCCAUCUCGUGUCGGAGGUCGGCAUCCGUCCGUCGUAGUAGCAGCGUAGCACACGUUCGGUCGUCCGCCCCAGCACAAGGAACAGUGUAGCUUGUACGGCAGCAUCACAUGAAGCCCACCUCUUUACACGAGGAUGAAUGAGCCUCGAAAGAGUCGAAUCCAUCUCGAGUUUGGGGCCUUUGGGCCAGUGGUCACUCACGGAGAUGGGUUCCCAAUACUCACCCCCGAAAACAGCCUAAAGUGUCUCUCUUUAUGGACCACGGUUAGAUGUGCUCACUCCGCCAUUGAUACCUAUCAAGAAAAGCAUGCAUACAAUGGACAGCAGUUUAAAUCCACUUGUCAACUGGGUCGGGUCCUACACUGAACUUUGAACAUAAAGACAGAUGCUUCCAGAGAUUAUCGCCCAGCCAACCGGCAAGGCCCCAUUGUUUAUUGCCUUUGGACCUGAGUUCAUUCAGACAUCGAUUGUGUUACUUGAAGCAAAUUGUACGUUGAUUAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
22.56%
ME_num:
MEP:
60.98%
HE_num:
HEP:
16.26%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.82
Avg Expression:
13.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.06326257027132 | 0.038037810736737 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.91048714677484 | 0.0130640116586374 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.70201027536759 | 0.0406073078898081 |