Chr:
Chr1
Start:
37106899
End:
37108493
Strand:
-
Ref_name:
OSA-LNCN0811
Sequence
(OSA-LNCN0811.1):
GUGUUGACAAAUCCGAAUUGCACUCGUGCCACACCUCCGUGAUGGUGCCAUCUGUGCUACCGUCUUCUCUUCUCUUUGUCUCGAUAUGUACUGUCGUCGUUUCUAUGGAUACAUAUACGCCGGUCGUGUUCUGCGUCAAGUCAUUGCAAGCUAGCUACCACGAUCGGGAGCUGUAAUUGUGUAAUUGUGUACGUGUUUUGAUGCGCAUACCGCUGCGCGCGACCGAUCCGUGCGUGGAUUAAUUGGCCGAGGCGAGCGCGGCGGUUGCGCUCGUUUUCCUGAAGUGUGUCAACUGUCACGUGCCGGCGAACCCGUGCCUUCUAGACGUGCCGGCCGCGCGUCGGCUGCACGUCCCUGUCAGGCACACACACACACACAAUCAGAGCAGCGGCGCGCGCGCGGUAUCCAUCCCUGUCGCCUUGCCGAGCCGCGCCAUCUGGGAGGAUCGGAUCGGUUGCCAUGCGGCGUACGUCCCUCGCUGCUCGCUUCGAUCGAUUACCGGCGCCGCGGGGCAUUGCCUUGCCGCCGGUCCGCGCGCGUCUCGUUGCGUUGUGUGGGCACUGCACAGGUUGACUCCGAGCGGUCGCGAAUGGCCGUAAACCUCGCGCGCGAGGCGAUCAACUCAACCGGAGCGGAGCCCCGCGCGCGGCAGGGCCAUGCGUGCGCGCGUGCAGCGGUUGGCGCGUUUGUCCGUAUCGUUUAACGGUUGGUGGCCGGAGGUGGGGGGACCCCGGGCGCGGUCGAAAGGAAGCGGAUGGAUGGGCGGGCCACGGGGGGAAUUGGCAGCGCAACCGCAGCGUGCCGGAAUCGUGGCGAUGUCAGGGUCAAGGCGCCCCCGGUGCCCGAAACGGGGAAAAGAGACGAGUCGUCGACUGUCGUGUCGGCAAACACCUGCAUGCCGCCGGUCUAGGGCUAACAGACAGGUGAUCCGGAUUCGUCCUCGGCUUCAUCCUUCCAGUGGUAAGCGACGUAACCGUCGACAACAAGGCGCCUGUGGUGACUUCGUCAAUCUCUCAAGGAUUUGCCGGCCUAGUCUUCGAAGAUACUCAUAGGGGUAAGUUUUACGUGCGUGUGUUUAUAGGGGGUGAGUGCGCGUGCGUUGUGAGUGUCUGCGUUGUACUGUGUAAUUCUUGAAAAUGCUUUAGUCUGGCCGACCAAUGCGAAGGGGAAAAUCAGACGGCUUGCUGAAAAUAUCAAUAUCAGCCAACCCACUAAAUACCCAAUGCUCUAUCUAUAUGGUUUCUUUCUCCUCUCUGCUGCAUACUCGGUCUGCACACAGCCAACCACUUAUGUGUAGCAAUUUUUUUAUUUUUUUUCUUAUGAUCCGAUUAUACAUUAUAUUACUUACAAUUAAAUCUUUUUAUCAAGAUCUCACAUGAUUAUAUUCUGAUAAAUAUAUACAUAUGUUGCAUAAAAUAUGGUCUUUGUGUUAUGGUCAGUUUUUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.71%
ME_num:
MEP:
9.76%
HE_num:
HEP:
8.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
1.00
Avg Expression:
33.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.82365105806177 | 9.16718865045634e-05 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 7.88858866419575 | 8.76294340952309e-89 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 6.88943477963367 | 3.59063909625387e-11 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 7.53629125882825 | 3.42844362204273e-92 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.35866093923603 | 1.07511969978792e-05 |
| 6 | 9311 // leaf // control--/--9311 // leaf // salt | 4.75969587949005 | 2.29732192280867e-16 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 8.71105166261573 | 2.2598009336917e-51 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 8.76398209532064 | 2.25028479657556e-125 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | 7.56742049702903 | 0.00317519864109329 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 8.22668635847565 | 4.02072811007744e-57 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 7.98566675925591 | 1.3799046609858e-81 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 3.16086594596121 | 1.37388207993802e-06 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 6.17973708627982 | 0.00340202733331864 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 8.71267384111481 | 1.2358570910052e-80 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 6.17963584665412 | 0.00343069772351914 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 6.17956707761396 | 0.00341213029344673 |
| 17 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.55545940124796 | 6.33166890187864e-15 |