Chr:
Chr1
Start:
35775541
End:
35776404
Strand:
.
Ref_name:
OSA-LNCN0780
Sequence
(OSA-LNCN0780.1):
AUGUACCAAAAUUUACCAUAAAAAUUUUACUUAUAAAUUAAUUUUUAACUAUUAAUAAACUGUUACGGCUUAUAAUCAGUACUCAAACAAGUUUGAGGUAGUACCGCGAGAUUUUUUUUAUGUAAGAUAAGAAGUAGAAACACCAAACGUAUGCAGUCUGCAUGCAUGUGACAAGAUCCAAGAUUCUACAUACAAACCCCUGUAAAACCCAUAUCAAUUACUACUACUACAUACUGACACCAAACAAAACAAGGAAGAUUUAAAAGCCUCGUAGACGACACACGCUACACAGAGAAACCGAGCAUGAUAGCUGCAGGUCCCUCUGGUGCACCGAAAAAGGGCCAUGCACGUAAUUCGCAUCAUGGUAAGUACUAUCGGACACUAACACGUAUGAGGUUGAGUUUUUUUUUUUUUUUUUUGGACGGAGCAAGUACGUGCAACAUGCACUAUGCUGCUUUUUUUUUUUAACCAAACAUGCACUCUGCUUUCACUCUGCCGUGCACUAUGCUUUAAUUAGUGAGCUCGCUGGUCAUUUCUUCUUGGCGCCGACCACGGGGGCCGGCCUGCCACUGCCUUUCUUGUCGCCAGAGCCAGCGCCACCGCCGCCCGUCUUCUCGCAGGCAAGCGCCGCCGCGGUGGCCACGGCUGCCGCGGCCGCCACGAUUUGCUUUCCCAUGCUCUCCUUGACCUGGCCCCUCCGUGGCAGCGGGUUCCCCGACGGCGCCUUGCUCAGGCAGCGCUUCACCGGAGCGUGGCUGCUCGUUGCCAUCGAUGAUGCACACACUCUCUCCCGCUUCGAUCGACCACUGAGCAAGUGAGCAGAGCAGACAAUGUAGUUCUUCGUGCUUUGUACUUUUGUAGUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.15%
ME_num:
MEP:
15.04%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.20279984551705 | 0.00762376992618165 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.95563577932804 | 0.0184389068037447 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.70637588098894 | 0.00430454529494743 |
| 4 | 9311 // leaf // control--/--9311 // leaf // salt | 3.55906161758785 | 0.00926505754649386 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.46087153513925 | 0.000774890378556349 |
| 6 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.93664703403504 | 0.0006125542231883 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.08063073072686 | 0.0428060883431476 |