Chr:
Chr1
Start:
34643798
End:
34645466
Strand:
+
Ref_name:
OSA-LNCN0763
Sequence
(OSA-LNCN0763.1):
GAGAACUUUGCCUUUGUUGUGCGAAUCUGGAACGGUGGAAUCGCAUCAUGUAAGCACAAAACUGAACUUUCAGAAAAGGUGGCAUAUGCUUCCUUAUGAACUGUUAUCCACUCCAAUGAUGGCAAUAAUAGAACAAUAAGUAUAUAUGCAUGUAAAUAACAAAACAAGAGAGCAAUUCAGGCAAAAACAUUACUGCUCCGUUUUAACAAGAUUGGGCCUCUUAGUAGAUACCUGCAAACAAAGGAAGAUCGGACGAAAGGUUACUGGUGUACCAUCCACUGGGAUGGAGGGAUUCCAUGCAAAGGUAGUCAUUUGUCCCAUUGGCCCAACUGGAUUGUUUUACUCCAUCUUUCCAUUGGAGGCAAAGUACAAGAAAAGGUGGUUCUUUUACAGUUUGAACACACUUCUUAUCAUUCAUCACAAUUGGUGGCUAUCCUGUACUCCUAUAAAACUUCGGGGCGGUUCCUUUCAGUUGGCAGUUAUGCUUCGGCCAUGUUGAAGCUCAAAGAAACACUCCUAAUAACUAUAGCAGUUAUGCUUCAGCAUGUUGAAACACCAAGAAUAUUCCCAAGUUAACUAUAGCAGCUAUGCUUCAGCCAUGUUGAAGCACAAAGAAAUAUUCCCUGGAUGACUCUAGAUUGGAGCCAUGUUGUUUUGUGUGUGAGUUACUAUGUUCUGGAAUGUGACAGUGCAAGUGAUUUGAAUUUAUAAUCAGACAGAAAUGCCUUUGAACUGGAUUAAUAUGACCAACCGCAACAACUAAUUCAUAUGAACUAAACAGGGUUCACCUACUACCGUUUAAAAACACAACACGGGCUGCUUUUUUUUUUACCGUAGAGGUCUCAGACCAGCUCUUGCAUAAACAAGAAAAUCAACAGAUUAAUGGACAAGCUGCAAAAGCAAUACAUCUUGUUUGAAGCAAAGGCCAGAAUGAAUUCCAUUAUCU
Sequence
(OSA-LNCN0763.2):
AUUCAUGUUAUGCAAGUAUCCUGUGGGUAAUCUGGAUUCUGGAGACUGGAAUAGAAGAAAUGCUAAAAUUCUCUAAUCAGGCAAGGUGUGUACAGGUUACUGGUGUACCAUCCACUGGGAUGGAGGGAUUCCAUGCAAAGGUAGUCAUUUGUCCCAUUGGCCCAACUGGAUUGUUUUACUCCAUCUUUCCAUUGGAGGCAAAGUACAAGAAAAGGUGGUUCUUUUACAGGUGAGAUUGUGAUCAGUUGCUCAAAAGCCACUUGGCGCCUGUAACUCAAUUUAUCUAACAUAAUAACCAUUCAAGUUUGAACACACUUCUUAUCAUUCAUCACAAUUGGUGGCUAUCCUGUACUCCUAUAAAACUUCGGGGCGGUUCCUUUCAGUUGGCAGUUAUGCUUCGGCCAUGUUGAAGCUCAAAGAAACACUCCUAAUAACUAUAGCAGUUAUGCUUCACCAUGUUGAAGCACAAAGAAAUAUUCCCUGGAUGACUCUAGAUUGGAGCCAUGUUGUUUUGUGUGUGAGUUACUAUGUUCUGGAAUGUGACAGUGCAAGUGAUUUGAAUUUAUAAUCAGACAGAAAUGCCUUUGAACUGGAUUAAUAUGACCAACCGCAACAACUAAUUCAUAUGAACUAAACAGGGUUCACCUACUACCGUUUAAAAACACAACACGGGCUGCUUUUUUUUUUACCGUAGAGGUCUCAGACCAGCUCUUGCAUAAACAAGAAAAUCAACAGAUUAAUGGACAAGCUGCAAAAGCAAUACAUCUUGUUUGAAGCAAAGGCCAGAAUGAAUUCCAUUAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.02%
ME_num:
MEP:
41.87%
HE_num:
HEP:
56.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.50
Avg Expression:
11.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.01679969172998 | 6.2947164963325e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.25417772795062 | 1.02986595890723e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.04854945323382 | 4.81403629401311e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.13920559392974 | 7.79131808461716e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.03267888175549 | 3.160269841111e-06 |