Chr:
Chr1
Start:
34661655
End:
34663664
Strand:
-
Ref_name:
OSA-LNCN0761
Sequence
(OSA-LNCN0761.1):
GUCAAGUAUUGUUAUUUUUAAUUGCAAACUUCUUGUAGCUUCUGCUUUCUCAGGACAUUUUUUUUCAUGGCCCGUGGUAUGAAAUAUGACUAGUUACUGUUAUCCACUGGCUUUCAUACCAUGACAAUAUAGACAUACAGUACUCUGUUCAUUCUCAAGUUCAUGUUUUUUUUCCCAUUCUGAGUCUGUUUAACCUUAAUUUGGCUGCCUUGAUAAUUGCUUGAACUUAUACGAGGGGCAGCUUCUAAGUGGCUUCAGCUGCGCAGUUGUUUCACGCAGUCAUGACUAAAUAGUCACAGCUUCAAAUGUAAUCAUAUAACACAGCUUCAUUUUAACAAAAUUUAUGGCUGGCCAGUUCACUAUAUUAUUUAUCAACCGAUAAGCAACUUUUGGAAUAUCUGUCCCAAAAUGAUCUUUGCUUCUUUCCCCUGUGAUAACCUUGUGUCCUAGCAUACAGCUUUAGUAGCACAAUCCUCAUAACUAAGUCUAUCAGUUUUAUUUCAUAUUUUCUCAUCCCACCCUAAAGGAAAAAACAUCGCUUUUGUGAUUGCCCUCACUAAUUUUCUACAGUCUCCUACUUUGUUUCUUUAUCUGGCAAAUGACACUGUAUCAUAGUGCACUUCUUUUGCGAUGCCAUUAUUGGCCUGUGUUCUUUUUAAGAGGUAUAUUACCUCAUAUGCUUUCUUGUCCAUCACCUAUAUUUAUGAUCCACAUUUUUUGAUGCAAAUACUUUAUAGUUUUAUCAUAUUGCUGUGUGCUUUUGGUGAAAGAACCUUACCUUUUGGGGUGUCAAAUACCAUUUCAGGAUCUUACUUAUUUAUCUACUUCUAUGUCAUAUUUUCCUUCAUAUUUCAGGGUUGUUGCUUGUAUUGUGGGUUCUCACGCCUCAACCCAAAGAUACAUUCAGUUACUUGAUUUUAUAAACAGAGCUAAGGAUUUAGAAAAUUACUGAAAACUUACGAUCAUUAGUACUUUUCACUUGUUUUUUCCUGUCAUUGUCACACUGUGCAUCCUUUUUGGAAGUUUCACCUAUUCCAUGUUUGUUUUUUUAUUUUAUUUGUCUUUCAUUCCCGUACGAUGAUAUAAUGCUUAUUGAUUACUACCUUCUUUUUUAUAAACAACUGCCAAGUGUACAACAAUUCCUGUGCUUGUAUAUGUAUUUUGAGUUCAUGUUUUCUACCAUGAUCAUUGAUCAUUCUGUAUAUUUUCAGCUCUAGCUAAAGCAUCUGAGGUUGAAAUGUUUACAUCUUUGAUUUUCACUAUAGUUUUGUGAGUUUAUGUUGGAUGCUCAGCGCUCUUCAGCUGGCAUUUGUUUUUUUUACAGUGGCUAGGGGUGAUCCGGGGUUCCGGCACAUGAAAUUCUGGGGGUGAAGGGAACAGUGUGAUAGGGCAUAUGUGUUGACAGGAAAAAGUCUCAGAGAUUUUAUCUGAUCUCUGUUGUAGAACCAUAUAGUUCGGCCCAGGAAGAGCCCCAGUUUAACAUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
43.5%
ME_num:
MEP:
47.56%
HE_num:
HEP:
8.74%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.84
Avg Expression:
6.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.94555648459605 | 6.92369419147982e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.03087642305303 | 1.97609548105418e-21 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.62846671082422 | 2.01853574166569e-30 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.20367177079817 | 1.03121101614513e-19 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.30294798870216 | 4.57324935289983e-21 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.28186139172349 | 1.96152062692845e-28 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.19798199934242 | 0.0441661124969385 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.28625914926238 | 0.036044289516932 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | -1.42576025126341 | 0.00712094291528199 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.28186766100363 | 3.71388866325536e-27 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.09444633684243 | 5.63658679251935e-26 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.52349367831258 | 1.53408768545329e-26 |
| 13 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.40142075934987 | 0.000112669389022797 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.92299815095146 | 7.18477208884647e-05 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.67628520552437 | 1.7322663369987e-38 |