Chr:
Chr1
Start:
34306162
End:
34313711
Strand:
-
Ref_name:
OSA-LNCN0756
Sequence
(OSA-LNCN0756.1):
AUCAGAAUGUGCAUAAUGGGCAUAGGUCAACUUGUUGAUACUUAUAACCAAAACAGGAAUCAUCGACACUGAACAUUAAUUAAGCCACCGAGGGCAAUAACUAGAUAUAAGAGAAACAGGAAAUGGAAUGCAAGCAAGAUGCAUCACUGCAAAAGGAGAAAACAUCCACGCAGGACAGAAGUCUACAGAAACUAAGACUAUAUAUACUUGCUCAUAUAGAUCAGAAGACAGACUUGUAAACAUCCUACCUAUGUGUCUUUAUCAAUAGAGAAAUACAGAAUACUCAGAAGGUUGCCUAGAAACAUGCAAGCACAAGGGGAGGCAAAGCAAGCGCAUUGGAUGGAUCAACUAUUAAACCGCUCUCGAAUUUAACGCAGAGCCACUAGGUGAGCUGCUUCAUACUGUGAUAUACCUCUCUCUACUAUAUUGUGUUGGUGAUGGUGAGUCUGCCAAUGCGUGUGUUCAAGAUGUUUUUCGACAAUGGAAUUCAAUCCAGCCUCCAAAAUGUGUAAGAUGGUAUAUUCUCUAGAUAAACAGAUUGCUUGGGUAUGUGGCUAGGCUAUUUCUGGAUUGAUGUUUGAUUGAAAAUAUUUUUUUCCAAGCAAUGUAUAAAUCUUUUUGACUUUAUAUUUUGUAAUGUUAUUUCAAGUCCCUUGCAACACAAGGGCAUUUGGCUAAAAGUUAUUCCUAGAAAGACCCAAUAAACAAUGAUAGAUCUCACGUGUGCCCUUUCAAAUUACAGGCCAUAUCCUAAAAAAAACUAGAAGAUAGGGAUGAUACACUAUAUUACUACAAAGUAGUCAACCAGAAUAAUGGAACAAUAAUAAAGUAUUUGCCACAGUGGGAAGGGCCUCCCCAAAACACUAAUGAGUAAUGAGUGAAAAAUAAUUCCUCACAAGUAUUUUGUUUGUUAACUUGUUAUCAAGGAAACAUUGAAUAUACGUACAAAUGAAUAUGAAAAACAGAAGGAAAUACGAUGUAAUGAUGAUGAAAUGGCAGGGAUCAGAAAGAAACCUUACUUAUGGGGCUAUGGGCAUGAAAUGUUUAGUAUAGGAUCCUCAUAUUGGCCACCAACAUUAAAUUCCUAGUUUAAUUUACCUUAUGGAAGUAUUGAUUACGACACUAACAAACUUGUGUCAGAAUUUGUUUUGGGCUACCAUUAGUUUUGAAAUUUAAUAUAAAAUGAUAAUGACUUUAAUACUGCUGAAGAAAUCAUACAUUAAACUAAACAAAACUUCAAUACAUCAUUCUCAGACAUCACAAACUGUAUGAGAAUAGAACUUGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.41%
ME_num:
MEP:
51.22%
HE_num:
HEP:
48.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.85
Avg Expression:
38.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.03356588464004 | 4.56688924520703e-55 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.84503016096976 | 2.86386948160434e-48 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -2.0309231020758 | 4.91624193312162e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.82298892077117 | 6.50933715307487e-17 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.49111013429181 | 2.5358914351654e-08 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.36120430748116 | 5.51599617185945e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.91889479863977 | 8.66928949160558e-18 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.43232978486642 | 8.54457382679345e-42 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.25932810844575 | 6.45509142786214e-05 |
| 10 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.11308510846022 | 0.00192030918530502 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.02439994114303 | 2.035943205202e-25 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.90450222479273 | 3.97055569533864e-68 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 1.34332016079926 | 0.0095522949514148 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.73262781542034 | 5.20224959037802e-46 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.71266139942523 | 1.48442172639509e-19 |