RiceNCexp:Browse

OSA-LNCN0752

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr1

Start:

34149242

End:

34160177

Strand:

Ref_name:

OSA-LNCN0752

Sequence
(OSA-LNCN0752.1):

AAAAAAUACUCUUAGAAUGCAGACUUGCAGAAAUGCUUGGAUUGGAAUGUUUUUGUUCUCUAUCAGCUUCAGCAAGUCUAACAAAAUCCUAUGCGGCUAUGCACCAUAAAAAAACAGAGCCCUGAGAACAAGAUUGGAUAAAUUCUGCAAACUUCUUUUCUAUUUUUGUUGUUCCUGAAAGUUUCAUAUUCCUAAUUUCUUUAGUGAUAGCUGGUAUAUCCAAAUGUGUAGAAAACUCAACUGAAGUGCAUACGCCUCAAUGGCUUAGUCUAUAUUUUGACGCCCUUGUGGUAACAACUAUGGCACCAUUAAAUGACCUGGUCCAGGGACACCUCAAUAAGGCCUUAGGGUCCUUAGCCCAAUCAGGACCAUGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

LEP:

7.11%

ME_num:

225

MEP:

45.73%

HE_num:

231

HEP:

46.95%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

callus

Tau :

0.74

Avg Expression:

26.13

Tip: OSA-LNCN0752 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-1.28126417138048	0.0194237341482553
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-1.89065929377089	0.000592425482016917
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN	-1.25821543862927	0.0329489244777281
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-1.39909273045876	0.0039694854870635
5	Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"	5.14917763511389	0.0188959289380468
6	Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"	5.68526952938219	0.00575649718171492
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-1.08604476030217	0.0398174009184322
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-1.07011609496701	0.0280808391847351
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-1.10166786835498	0.0140786721607876