Chr:
Chr1
Start:
33809341
End:
33810565
Strand:
-
Ref_name:
OSA-LNCN0741
Sequence
(OSA-LNCN0741.1):
CAUGUUCGCAUUGAGAUUCGUAUUCCCUUGGAAACCACGUCGCCAUUGUUGAAUUGAUCAAUUGAUUAUCCAACCACAAGUUGCUACUGAACUUAUAACACACACAUGACAGACACACCAGCACCAGGUUACAUCCAUGAUCCAUCGAUAGAAACUCACGCUUAAUUUACACAACGUCAAAACCCGUCGAUAGAAACUCACGCAGUCACGCUUAGUUGUACACAACAGCAGAACCCACGGGGCCACGACGAUACUACCGGAGUUGAAGAGCUCUGCUCCGUCACAGGCUCACAGCCUCAUCUCAUGUCUCAUGACGUCAGAGGCUCCGUGCGUCCACGCGCCGUAACUACCCGUGCGCUAGCUUCGGCGUGCUCGUGCCAGACGACGCGGACGCCGGCGACGACGGGAAGGAGAACGGGCCCGGCGCCGCGCCGUGUGGCCUGACUCGAGAUGCCUGAGACCGGCUCCAGUGCGAGAACGAGAACGACGCCGACGCCGACGCCGACGCCUCGCGGAGCUUUGACGACGCCGACGACGUCCUGCCCGCCGCACCGGCGGAGACAGCGCGGGGAAGUGACGACGGCCACCGCGACGAGACACGGGGAGCGCUAGGCACCUCCUUCUUCGCCUUCGCCUUCGCCUUCUGCGCGCUUGUGGGCGCGGCGCUCAUGGUGGCCGGCUGCACAGCUGCCCGCUUCUUCUUCAACAGUCGAGGGAGGUACAGGCACAAGGCGGUGCACUUGACGCCAUCGGCGCCGGCCUCGCCACCGCCGUUGCCUGCUCUCCGUUGGGGCGUCGAGGACAGUGCAGAUCUGGUGGGCUUCUCUGGCAAUAGCCGGAGCGACGACAUAUGAGCGCGGCGGUUUGCAGAAGCCAUUGGUCGGGGGGUGUUGCUCUCAGCGAUAUUGUGAUCAGCCACAACAAGAAAGGAUACGAAUAGGCUUUUGUGCAAUGUUUUGGCAUUGGAGAUCACCAGCUCUCUCUCGGGUCUGUAUCGUCUGUCUCUGUAGCCAAAGACAAAGCUUGCCGUACAAUCGUACAUUGCUUUUAUCCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.76%
ME_num:
MEP:
25.81%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.85
Avg Expression:
3.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.74838844816028 | 0.0345413366024731 |
2 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.84285169084581 | 2.16722096356791e-05 |