Chr:
Chr1
Start:
33652284
End:
33655081
Strand:
+
Ref_name:
OSA-LNCN0737
Sequence
(OSA-LNCN0737.1):
GCAAACAUUCCAAUCAAACGCAUCUAAAAAAGAUAAGUGGCCAGCAAGAAGUGCAUCUCCAAAACAAAAUUAUUUCUUAUCAUGAUUGGGUCUGAUGGCAUCUAUCCAAAAAAAAUGCACAUGAAAUCAACCAGGGAAACAUAAGAGAUACAGGCUACAGCUCAAGUACAUCCAACAAAAAUCGAGGUGGAUUUAAGCCCGGAAAAAAUCCAACAAAAAUGCACCAGUGCCGUUUUACAUAUUAUUAUAUGACCCCAUAUAUCCUACCAGGCUACCACACAUAGUUCCUGUUAGGGAUGGAUUUCUUGGUGGUAGAACAGAACAUUCAACAAUUUAUGUCAACGUUGUAUUAUAAAGCAGAUAUGGUCUUGCAAUAAGUCCCACUAAUUGGGUAAUUCGCGCAGGUACAGAAUUAUCAAAACGUAUCUGACGCAAAUCAAGCAUAAACAUCAAUACACCUCCCAACUUGCAAAAUUAAAUUGUGUUAACUCAUAGACAGAAGCCAAUUAUAAAAUCGAUCAUUCUAAGCAGCAGGAAAUCGAAAUGCCUCUUUUACGGACACUAACUAAAAUAGCGGGAUCAUAGCCCAUGAUGUAUGAACAUAUUAGAUCAAAACAAAACAGGUAACGUCUAUUAACACUAAAAAUUCCCCAAAUCUGACGCCUGAAUUCGCCCUAAAAAAAUCCAGCAUCUUCGCGUCGAGGCAAUAACGAAUGAACCUAACCUACCACCACUUUCCACUCCCCCAGACCCUCGACACCACCACCCAAUCGGACAAAACGAUCUCCAAAUCAACGACAGGACCACCCCCCAAUACCUACGAGAUCCACUUCGCUCGUGGCGAGAUCACGAAACGCGUGAGGAACUCCCACCACAGAAGGAUCUCUCGUGCUUCAGACGCGGAAAAGCCAGAUCGAUCGGGGUAAGAGAAGGGAAGGGGAAGGUCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.42%
ME_num:
MEP:
35.57%
HE_num:
HEP:
62.8%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.62
Avg Expression:
18.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | -1.13146265434185 | 0.0406072402318369 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.10865803900696 | 4.95378763760757e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.07467382489093 | 6.24230592945829e-06 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.2028944672631 | 0.00297681757813854 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.29972566737257 | 0.00290857355489103 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.2324755471895 | 0.030204506336858 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.27809706686751 | 0.00393900519213343 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.18586668165655 | 1.02776728232274e-10 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.3680981351602 | 1.34940458102277e-05 |