Chr:
Chr1
Start:
33712632
End:
33714307
Strand:
+
Ref_name:
OSA-LNCN0735
Sequence
(OSA-LNCN0735.1):
GUAUUGUAUAAGCAGAGGCUAUAUAUGAAGACACGUUAUCAUUUAUUUUGUAUAUAUACUGAGUUACAUCUAAUCAUUUAAAACAUUGAUUUUAUUUGACGAUAAAACUAGCAAAUCCCGUGGUUUGCCGCGCAGGUGCCAACGAAUAUUAUGACUCACAAUAGUACACUGCUACUAGAUGGUUAUAUAGAUCGCCUCUGCACUCCACACCUUCCCCCCUUCCGACUUCCGGCGUUCCGGCUGCUCGCUGCCGUGCCGCCGCCGCAAGCUUUUGCUCGUUGAUGGCUUGAUCAGCCACGAAUGAGCCUAGUAGGCCAAGUGAUGAGUAAAGGACGAGGACAGAGAUGGGCCGUAGUGGGUUUCUAGCAUGACGAAUUGGACCGUAGUGGUACCGCUUCAGGCUGCUUCUCUCUCUCCCAUCGCUAUUGUUCGUCUUCCCCAGAGCUCCAGCCGCGCCAGUAUGGAAAUUCUUUUGGAAAAAUUGGAGGGUAGGCUAGAGCAUAACGAAGCUACCUGCUGGAUUCGCCACUGUAGAAGAUCGACUCACGGCGUAUACUGGUCAAGAAAUUCUGGAAUGUCGGCUCAAUACGAAAAUACAUACGGGCACGGUAGCUGAAUUGUAGUUUCAUCCAUCUAAUUACCUCGAAAAUACAUAUGGGCACGCGGUAGCUGAAUUGUAGUUUCAUCCAUCUAAUUACCUAGCUAAAGUAGAUAAUUUAGCUCACAAGCUGUUUAAUUAGUUCGUUAUCGGUUCCCUACAAACCGCAAACGUGAGUAUAAUCAACCAAUUAGCUACGGACGCGUUGUUGUAUAGUACAAGUAUAUUUACGCGGUCUUUCGGUCUUUGUCCUAAAACCUGGCAACUGUCCGUGGCCAACUGUAGAUGUGUAUAAGUAUCCAUGCGCGAGAUGGGGAUUCUCACAACGACGGGUUGGCGGCUUGGCAGACGAGUCGAAGUUAGCACACAGGCCAGAAGUCAGAAGCUGCGGACGCUGUAGAGAUCAUCAGAUGAUGAGGCGCCUCUUGCCAUUGCUCGGCGUUCUCGUCCUACUCUGCGCGGCGAGCCUCGUGGACCUCACGGAAGGAGCCGGAGGCGGAGGCGGAGGCGGAGGCGGAGGAGGACGUGGCGGCGGAGGGCCUGCCGGCGGAGUCGGAGUAUUUGACGGGGAAGUGGACAGCAGCAACCCGCGGGGCCUCAGCGGCGGUACGUGGGCUGCAUGCUCUGCCUCCUCGUUGCUCGCGGCGGCGGCCUUGCUCUGGUAGCUAGCGCUGCUCCUAAUGGUCAUACUUCUUUCGUGUACGUGAUCGAUCUAUGCUGUGUGUGUUUGGAGUGGCAAGUGGAUAUUGUGCGCCUAGGCCGUAUAGCAGAUAUCAUGUCUGGUUCUUCUAUAUAUCGUCGUGAGAGACGAAGCUGGGAUGUGUGAUUAUAAAGUGUGGAUGUAUAUAUCACUGCAUUUAUUCAAUCAAGAACACGGUUAUUGUGAUUUGUGAACUUACCUGAGUUAUCUGCACUGUACGUGUUUUGUUUCGAAAACGCUUUAAGCCGGACGUCCAGCGUUCAAAGAAAAAUCGGUCCACGGUCCACCAUCAGAUCAUCCCAUCAACUCCACUAGUUUUCUCUUUCAACCCCACCACAUGUUAGCCUUAUCCCUUCAACUUUCAAACCCCCCUCUCUC
Sequence
(OSA-LNCN0735.2):
GCUUGGCAGACGAGUCGAAGUUAGCACACAGGCCAGAAGUCAGAAGCUGCGGACGCUGUAGAGAUCAUCAGAUGAUGAGGCGCCUCUUGCCAUUGCUCGGCGUUCUCGUCCUACUCUGCGCGGCGAGCCUCGUGGACCUCACGGAAGGAGCCGGAGUAUUUGACGGGGAAGUGGACAGCAGCAACCCGCGGGGCCUCAGCGGCGGUACGUGGGCUGCAUGCUCUGCCUCCUCGUUGCUCGCGGCGGCGGCCUUGCUCUGGUAGCUAGCGCUGCUCCUAAUGGUCAUACUUCUUUCGUGUACGUGAUCGAUCUAUGCUGUGUGUGUUUGGAGUGGCAAGUGGAUAUUGUGCGCCUAGGCCGUAUAGCAGAUAUCAUGUCUGGUUCUUCUAUAUAUCGUCGUGAGAGACGAAGCUGGGAUGUGUGAUUAUAAAGUGUGGAUGUAUAUAUCACUGCAUUUAUUCAAUCAAGAACACGGUUAUUGUGAUUUGUGAACUUACCUGAGUUAUCUGCACUGUACGUGUUUUGUUUCGAAAACGCUUUAAGCCGGACGUCCAGCGUUCAAAGAAAAAUCGGUCCACGGUCCACCAUCAGAUCAUCCCAUCAACUCCACUAGUUUUCUCUUUCAACCCCACCACAUGUUAGCCUUAUCCCUUCAACUUUCAAACCCCCCUCUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
36.99%
ME_num:
MEP:
42.68%
HE_num:
HEP:
20.12%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.89
Avg Expression:
12.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.60404189202601 | 0.00402308399789146 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.47823289925159 | 0.00300114140092764 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.40106892832925 | 9.38744371024441e-42 |
| 4 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.53598475872527 | 4.96419098837617e-05 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 4.39458991444338 | 3.60634321391982e-06 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.41849741172749 | 0.0135221677246773 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | 1.50904166465272 | 2.49892405590042e-54 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.74173958523074 | 0.000585807875669123 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.88113780656842 | 0.00120040195961854 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.07059986851491 | 0.0264005050584902 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 2.30301401849103 | 0.000338413115179987 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.24584173611145 | 0.00028208494271529 |
| 13 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.43376259574962 | 1.41606041987248e-05 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.26876427829099 | 1.35944816646553e-06 |
| 15 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.43366433356387 | 1.45758536246324e-05 |
| 16 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.4335430856426 | 1.43375923792597e-05 |
| 17 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 4.90560465921937 | 2.36085720988106e-38 |
| 18 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.20572821598729 | 1.421656110052e-30 |