Chr:
Chr1
Start:
33455750
End:
33456422
Strand:
-
Ref_name:
OSA-LNCN0732
Sequence
(OSA-LNCN0732.1):
AAAAAAAAAAACAAUUAGGACGAGUGAAGGCGAUACCGAAGAAUGUCAUUGCUUUAUCGCCUGUGGUGCAGUUUCAGCACUGUUAUGUACUCCUAGUAACUGUGUUGCAAGAAAAUUAUGUACCAAUGGAUGCCUUGACAGCUUUCUGUCCUGCUGCUAUGGUUACUGACCUAAAAUCCACGCAUUAAAAGCUGAAACGUGGGGAAACUCUCUUUGCCAUGGAAAAAUCAGGUGGGAACACGACUCUCCCCUCCGAUGAUUUAAAAAAAAAUUGAAAUGUGGGUGAAACCACCAUCUAGAAGGUUUGAAAAUAAUUAAUAAUAAAUUAGAAAAGUAUAUAAUCUAAGAAAUUUAAAUUAUGAUGCCCACCCUCUAAAGGAUUCAAAUUACGAUGCCUAAGAUCUAAAAUUACUAAAAAAAUCAGAAAAUAAUUACUACGAGUAAACCAUGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
71.54%
ME_num:
MEP:
25.81%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.95
Avg Expression:
6.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 6.70384331381391 | 4.83995692665789e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.72354908532887 | 0.00453069386287056 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 8.00284076027261 | 1.27895158129885e-10 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.93745979603114 | 0.000121665472255823 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.67193163985947 | 1.90904926838567e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.94753022390287 | 0.0010710564460931 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.91921994808785 | 0.0107503721670507 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.22254679458866 | 0.0348282904052253 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 7.25440890310977 | 9.81849779072804e-09 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.13488084541736 | 0.0316114691939921 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.7253122947706 | 0.00791089530098923 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.28567607877408 | 0.00073730440557669 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.66661924292325 | 0.00172305087649105 |