Chr:
Chr1
Start:
33003254
End:
33004197
Strand:
+
Ref_name:
OSA-LNCN0723
Sequence
(OSA-LNCN0723.1):
CUGCAAUACAACAGGUCAUAAGAGAUAAUAACAACAUAAUACGAUGAGCAGAUAAAUAUUUUGGCACCAAUUAUUGUGUAUUAACAGAGGGGCAGUUAAGCACAGUAGGUGGAGAAAAGGAAGGAGACUAAAUAAACUAUGUUCCGUCAAUGAAUAUCAUUUAAAAGUACCCCUGUACACGUCGGUGUGUUGGGAGUUGAAGGGUGCCAAACUGUUGAAUCACAAUUAUACCUCCAUAUUAUCAACCAAGGCUAUCAUUAGAGCAAGCAAAGAUAGAUAUUUUUAAAGUGGCUGUACUUGCCAGUUCAGUCCUGAUUAACAUCAAGCUGUGCUUAUGUAUAUUAAGCAUUGUAUGUGAAAUUUAUAUUAAUAGGACUACCAGAAGUUAGCACUGAGACCGCUAGAACAUAUGAAAGUUUAGAGGACACCAAUAAUCAAAUACAACUCAAAGUUCUAUACCUUAGUCUUGGAUAAGCUAGAAAUUUCUUCUUUUUUUGGCUGAACUUGAUCUAAAGACAGCCAUAAGAAGGCACUUUUCAACAGGCUACGUAAGACAUUAGCAAACUCUCUGGCAUGCUAUUUGGGCAUAGAUACAUUUAUACAUUUAACUUAACAAAAGAACGAAGUAACUCCAAAUUGGUGAAACAAAAAUUAUUUCUGGAAAUUCUAGCCAAGCAAAAAAAAAAAAGAAUCUAUCAGGUCUUGUAGUUUAAGCACAAUCAGAACUCAACAAUUACUUGAGUUCAUAGAUAUGUACAUGCAGGAGAUGGACAACAAGAAAAUAUAAUCAAUUACUGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
20.12%
ME_num:
MEP:
68.7%
HE_num:
HEP:
10.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.90
Avg Expression:
13.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.09884587204266 | 3.85442857613176e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.09271494567009 | 1.00035105018669e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.15124704943382 | 2.24821599365604e-08 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 6.93185230845433 | 0.046860138408924 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.97004072744454 | 0.00357868944462527 |