Chr:
Chr1
Start:
32768290
End:
32773448
Strand:
+
Ref_name:
OSA-LNCN0722
Sequence
(OSA-LNCN0722.1):
CAUCAGAUUUGCCAACAGUGGUUUCCACAACCCGUCCGCCCCAAAUCCUAUCCCGAUCUCCCCGACACUGAUUUUCCCAACCAAAACCGAUCAAAAAUCGGGCUUAACGAACGCAUACAUCUCGCCAAAUCAUCGGCGCCCCCCCGAUCGUCCCAGGAAAACCGUAGCCCGAACCAACACCAACCGAUGAAACACGAGCAGCAACCCCGAAUUUCCGCCGCCGAAACGGGGAGAUCGCCCAGCCCACGAACGCGGCGUCCCCCGAGAGACCCUCCGGAUAGAGGGAGGACGACGACGGGAAGGAGGAGAGGGGAAGAAGUCCAGGCGUGCAAGGCUAGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.24%
ME_num:
MEP:
41.46%
HE_num:
HEP:
56.1%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.66
Avg Expression:
19.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.35659308976206 | 0.000115437057297163 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 5.59390477969385 | 0.000130120547405577 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 3.18276339547684 | 0.042675082950599 |
| 4 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.07618733203653 | 0.00329493383134799 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.9654616142806 | 0.000555674975504931 |