Chr:
Chr1
Start:
31807730
End:
31808248
Strand:
-
Ref_name:
OSA-LNCN0704
Sequence
(OSA-LNCN0704.1):
GCCUGCCUAGCCUCCCUAGUUGGUAAAAAGACACCAAUAUCCUCCCGACUCGCCUCUUCCCGAUCUCCUCUUGAGUCGACGGUAGUGAGGUGCCCCGCCUCACUGUCUUCCCCGUCUCUUAUUGCUCCCCACUACCAGAUCCACCACCACCAGCCGCCUCAUCCUAACUAGUCACUCUGUUUUGCCCCCACCAUCCUCCUCCAUCGCGAUAGCUCCAUCGAUGCAUCGCCUCACUACUCGCCCUAGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
64.63%
ME_num:
MEP:
32.72%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.82
Avg Expression:
3.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.67198172145419 | 0.0350390633069263 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.30004482873303 | 0.0353923861369711 |
3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.98169967817086 | 0.0449587355492621 |
4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 8.24473266045083 | 4.40800082716884e-06 |
5 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 6.73709959651836 | 0.000239748834698747 |