Chr:
Chr1
Start:
31806689
End:
31811353
Strand:
+
Ref_name:
OSA-LNCN0703
Sequence
(OSA-LNCN0703.1):
AUGUAUGUGCAAGGACGCAUAAACUGUGGGGCUUGAGGACAAACGAGAAAGAGGGGGGGAAGGGUGAGGAGGAGAUAAAGGUGCCAAAAAAAGCUCUCUUGUUGGAAUGCACGUCAAGCCAUGGAACAUGGCGAGGCACGGCGAGAUCAGUGAGAUAAUGAGAUGUCCAUGGAAGGUCGUGUGCGUGGCGUGGAUGCUUGCGCUCAUGUGAUCGAAAACGCAUGGAAGGGCUGCAGCUGCACUGCCUCGCGGAAGGCAAGGCGCAUGGUGUAGGCAGGGGUCGCCUGCGCGAGCUUUGUGGAAGGCUGUGACUGAGUGAGAGCAAUUUGGUUAUAAUCCCUCCAGUUAACAAUAUUUGAGUUGGGAGUAUCAAGUUUAGCCACGUCAAUUAUUAUCGAAUAGAGAGAGCGACAGAGAGGAGGGCCUUAAUAAGAUUUAUUUUCCGGAUCUUCAUGGUUUGAAAGUUGAAAUAUCAAUGGCAUCAUGAUCUAAGGUUGUAUUCCUUGGUGCCAGUUAGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.0%
ME_num:
MEP:
42.48%
HE_num:
HEP:
32.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.93
Avg Expression:
319.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.09324806532916 | 0.0392932492517524 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.78557511503733 | 0.00356701069503961 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.98639827523961 | 0.00476002998118961 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.15327490145958 | 0.00336914468913417 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 6.44643022660566 | 0.00245290597897297 |
| 6 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.18031054169514 | 0.000263789893264324 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 8.2524313798021 | 4.06370194409433e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.78600953826471 | 0.0228732896954699 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.89786188829118 | 0.0230613368153752 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.05908422795245 | 1.51493087884227e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.05292342153708 | 0.00967917282180835 |