Chr:
Chr1
Start:
31766405
End:
31767208
Strand:
.
Ref_name:
OSA-LNCN0701
Sequence
(OSA-LNCN0701.1):
ACCACCAACGGCUACAUCCCACCUAUAAAUUCCCCCUCACCACGCCGCCCAUUUCCCGCACUGCAAUUCCCACACUUGCACGCACACACGAACACCACAGAGAGAGUCCAGCGGCGCCCGGCGAGAAGCUUCAGCCAAGUCACAGCGGCCUCGGCUUCUUGCAGCUCGCUGCUCUUCCCUCUCUUGAUCGUGUCUCGUGCCACACAUCCUCGUUUCGUCAUCUCCAUGGCGGCGUCGACCAAGGCCUUGGCUCUCCUCUUCGCGGUGCUCGUCGCGCUCGUGGCGGCGACGGCGGCCGUGAGAGUGCUGGAGGAGGAGGCCGUCGAGCUGGGCGGCCUCGCGCCUGCUCCCGCGCCGGCCAACGCGGCGGGCGCCGUCGCGCCGGGGGCGUGGGCCGUGGCCGCGGUCGUCUCGCUCCUGGCCUUCCUCGCGCAUUGAGAUGAGAUUCGACCCCUGAGAGGGCGCAGCGGGUAGUUUGCGGAAUCUGUUGGGACGGGAAUCCUGUGGUUUGGAUUUCCGUUGCAGCGGUAGCAUUUGGUGUUUAUCUGAGGAGAUUAUUGCUGUACGUUUCUAUAGUUAUUUUAGGCGUGUUUGUUCUAGUCCGUUAUGGAGGUGUUGUGUACUGCCGAUCUCUCUUUUGCCUGUAUAAGAGAGGAAUAUGGUUUUGAAUAAUACAAUUCAUUUACUAUUCUUUUAUAAGCUCUGUCCUGUGCACUCUCAGAAAAACUGCUCAUAAAGGGCCAAAAAUACUCGGAACACGUUGGUACUACACUCGGAAAAAGGAAUAAGUUCAUUUAGUGACCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.52%
ME_num:
MEP:
12.8%
HE_num:
HEP:
54.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.91
Avg Expression:
476.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.04529237155849 | 0.000360752804277295 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 7.38653474119573 | 2.02742249504244e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.27622512609879 | 1.50284944340746e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 8.09946989021432 | 4.05860478392101e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.51985469482288 | 1.62423442082266e-09 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 7.01285469770652 | 1.76545193755905e-08 |
| 7 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -1.45723723953187 | 0.00120788439004467 |
| 8 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.77939064121461 | 2.3642137633323e-07 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.21609906731822 | 7.66403587753793e-06 |
| 10 | 9311 // leaf // control--/--9311 // leaf // salt | -1.04571565549563 | 0.00851753023477584 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 8.76374997262507 | 3.34573043496333e-13 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 7.64815769669089 | 4.0489167293295e-10 |
| 13 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.00640250692458 | 0.0204564048313125 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 10.9853484791582 | 4.77103746878409e-20 |
| 15 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.28314633656118 | 7.47206288701808e-05 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 10.9746481226433 | 3.16333712243174e-20 |