Chr:
Chr1
Start:
31413328
End:
31417307
Strand:
-
Ref_name:
OSA-LNCN0695
Sequence
(OSA-LNCN0695.1):
GUUCACAGGAUGUCCCUCAACUUAACAGUGAGAUUUGUGAGUAAAUUGCAUUAGCGGUACACAAACUUGUCAGGUGGGUGCAAUUUAGUGUAUGAACUUGUAAAAUGCUCGUUUUGGUGUAUAAACUUAUCUGAUACAUGCAAACUAAGGCUAAAAUAGCACGACAAGACCGAUUUUUCUAUGUUGAACAUUAUAAAUUAUAAAUUAGUAGAUGAGUAGACGACUGUGUGCACAUAGUAGUAGAAAUAUUAUAUUUAUAAACUUAGUUUCCACUUUAUCUUUCUUUGUUUCUAUCCCUUGCAUCAUUACUCGGUUUUUGAUUUAUGUAAUCAUUAUGCCUUAUUAUAUGUUUAUCCUUCUUAGACAUAUGUUUACAUAGAGUUUAAAUCAACAACAAGAUUAACAAGAUUAACCUUGCCGUGCAAUUUUGACCUUGUUCGCACGCACCAAACAAGUUUGUGCACCAAACGAGCGUUUUACAAGUUCAUGUACUAGAUUGCACCCACCUGACAAGUUCGUGUACCACUUAUGCAAUUUACUCGAGAUUUUUUUAGUUCCCUUAACCACAAAAUCAGAAAUGUGUAUCCCUAAACUCACAUAAAUCGUGCACUCAAGGUUCUAUGGCAGUAUAUAAGGGUGGUUUCACUAAUGUGGCAUCCUAGACAACAAAAAAAAAAAAGGUAUGUGUGGCCCACAUGUCAGGUGCAUAUUUUUUUCUUCUCAUUCUCUUCUCUUUACUUUCUUCUCUUCUCUUUUCUUCAAGGGAGGUUGUCGGCGUUAGACAGGGCGAGGCGGCUGGCGGUUUUGUACUCUUGGUUUGUGGUGGCGGCGGCAGGCGGAGUGGCUGGCGAGGGGAGAUUGGCCGCCCCGGGAGAGCGGGGUGAGAGGAGGGCCGAGAGAGGGGCAGAGCAGCCGGCGGUGGAGGGCCGAGGCCGAUCCACGAGCUCGCGUCGGGAGGAGAAAACAAUGAUAGGAUGCCGGUAGGAGAGGAGGGCGCUGGCAGGAUAGUGUUGACGACGACGAGAGGAUGCCGGCGGGAGAGGCGGUCGGCGCGAAGACAUCACCGGCGACGAGAGGCGGAGGGAAUAAGUAGGAAGGAGGUGGUGGCGGCUAGAAGGGGCGAGGCAGCGAGAGCAGAUGGAUCUUCAUCUAUGGGCGGCAGCGACGGAGCUUCAUUGCCGCGAGCACCCCGUUGAGACCAACGGCGCCCCACAGCCGACCCUCGGCCUACUUUGGCUUCGUCGUCGACGCCGCCCCCACAUGCCACCCUAGAUCUGCCUUGCCUGGACCACCUAGGGACCUUCACCACCACCUCAUCAACCACCCCACCGUCGGCACAGCCCUCCACUGACCCCGUUGCCUAGCAGCCAACCCACCUCCGUCGUCUCCAUCUCAGACUCCUCCCGGCGCGAGCUCGCGCUGGCCUCGGCCCUCCACUGUCGGCCGCUCCACUCCGCCGCUCUCUCGGCCCUCCUCUCUCGCCAGCGUGGCCGGCCGCCUCUCCCCUCGCCAGCUGCUCUGCCCACCGCCGCCCUCACAACUGAGGAUGAACAACGUUGUGGCCGACCCAACGGUGGACGUUGGGCGGGGUGGCAGCGGGCGAGCGCGGCAGCGGGCGGCGAUAGAGGGGGAGAGAGGCGGCCGCAGUGGCGUGUGUGCGUCGGUGUGGCAGUGACAGUGGAGCUCGGCUCGGCUCGCCAGCCGCCUCACUCCCGUCUGCCGCCGACAACCACCGUUGAAGAGAAGAGUAGAAAGAAAAGAGUAAGAAGAGAUGUGGCCCCCACAUUUUUCCUUCUCACUUAACUUACAUGUGGGAUCCACAUAUUAUUUUUAUUUUUUUUGGCUGACUAGGAUGCCACGUCAGCGAAAGCACCCAUAUAUACUGCCAUAGGACCUUGACCUCGAGUGCACGGUUUAUGUGAGUUUAGAGCUACACAUUUCUAGUUUUGUGGUUAAGAGACUUCAAACAAUCUCGCUGUUAAGUUGAGGGACCUCCGGCGAACUUAUUCCAAACAGAAAACACGCAUGGCCUGCUUGGCAAAUGAUAACGAACAAAUGGCCCAGAAACUUUCACAGUUGCUUGGUUGCUGCUUCCGCUUGUAGCUUCCAUCAUAUAGAUAGUGAGAUGUUAUGAUCUCAACUUAAUGAAAUGAAUGGAUUGGCCAAUUAUAUUGUAUUGUAUACUGCAUGGUUACCGUCACAAAAGAUGCGUGAUCCGCUGAUCCGCAUCAUCCAGAGUUAUAUAAUGGGAGACCAAAUGGACCCUGAACAGGUAAAAGGAAGCAUGUCGGGAGCUGCACAAUAUUUCUUCUCUUUCGUUCUCAAGCGCAAUACACAUCCGAUUUGUGCUCUACCACUUACAUCAAUCAUGCACACAUUCAUACGCGAAAAGGAAGGAAUUGCUUCGACGAGCUUGAACAUGCCUAUAUUAUUCUCGUCACACAAACACAAAAGUCAAUCAUAGCGCCACCGGAACAACGAGGAGCCGGAUAAGAUGACUUCUUCAUCAUUUCAUAAUAGCAAACAGGACGCCAGCCAGGCAACGUCAAAGAAAUAAAAAACAGGAGCAGACAAUAUCGUGCAUGCAUGUCACUUUCAGUUUUGGCAAGCAGGCAGGCAAGUAUUCCAGCCUUCCUUAUUUCUCUUCGACCACAAAAACAAGCUCAGGUAACCGAAGCUAGCAAGCAACAGACCCCUGAUAUUUCCUCCCUUUUAUAAAAGCAUUCGCACAAUUAUUCCUCGUUGCAGCCGGAGAAAAACGGGGCCAGAAAAAUAUCAGCCGCGCUACGGUACAAACCGGCCCAGGCCCGGCGGCCGCGAGAGAGGGUGACGGCCGCGUGACGCGCUCCCGCGUACGGAACGGAGCACGCGUGCGCGAAGUUUCCUCCUCAUCUCAUCCACCCCCUCUCGCAACUCUCGCAAGUUGCGUGCGGCGGCCUCGCGUCGUCUCGGUACCCAUCUCUCGUCCGUCCUGGAACACAGCGCGGUGAUGUGAAAUCUGGGCCUUUUGUCUCCACCUGCAGCCGAAGCUUCGGUCGCUACACGGCUCACACGCGCACGCGCACGCGCUGCAAAGCUACCAGUUGGGGGGGCUCGCGCGGGCGCGGCGCCUGUCGCCUUUGCGGGCGGUGGAGUUUUUGUCAUCAACUUGAGCGUCGUAGCAGCGACUUCUCGGCUUGGGAUUCGGCGGGGACGGGAAAUCAUUGGAGUUCCCUGAAUUUGUCCUGGCAAUGGCAACGCGAGGGCGCUGACUACUACUACUACGAAGGGGAUGAAUCAAGGAUCGCUCGCUCCGAUAAGGAAAAAAAAACUUCCUGUUUGAUCACUAUCAUGUCAACCUCUUUUUUCAUGUACAUGUGCGCCGUAGGCUGUAGCUUAAGAUCUAAGUAGGCGCAUCGUUUCAACGCCGCAUGCCGUUUGUCAAAGCUGCGUAGUUCAGCAAGAGGAGAGAUAUUGUUUUCUUAGAGCAGGUUUAAUAGAUCCUAAUCAGCCGGCGCUAGCACGCUUCGCGUCAGCCAAAUCUGACGUGGAGGAGUGAGAAGAGAAGGAAAAGAAUGGAGCGGGCGUUCCGUUUAUCGUUCGGCUGAAGCGCAACACACGAGAAAAAACUGCUUUCUUCCAACCAAAUGCGAGGAGAUCAGGUGUACAUGCGAAUAUUAAAUAUGUAAAUCUUCAAUAGAGGUAAAUAAACAGCUAACCUAAUAGCCAGCCUAUUAUAUUAGUGAUGGCUAUAGGUGACAUGGUACUAAUACAGAACCGGCAGCUGGCUAUAUUAUUAUCAUUGCUCUUAGAAGUCUCCCUCCUGAUCAGCGAGGAGGAGGCGGAGGAGGAUGAACGGGUCAUCAAUCGUAAACUAGCGCUAAUAAUUCGAGGGCCGUGACGCGAAUUAAAGAGGCGCCUGAUCCAUGACAGCCUCCCGAAAACAAUUUUUUUUUGACAAGCCGAAACAAUUAUUUUUAUCGCGAAUGAUUGAGAUCGAU
Sequence
(OSA-LNCN0695.2):
AGACUUCAAACAAUCUCGCUGUUAAGUUGAGGGACCUCCGGCGAACUUAUUCCAAACAGAAAACACGCAUGGCCUGCUUGGCAAAUGAUAACGAACAAAUGGCCCAGAAACUUUCACAGUUGCUUGGUUGCUGCUUCCGCUUGUAGCUUCCAUCAUAUAGAUAGUGAGAUGUUAUGAUCUCAACUUAAUGAAAUGAAUGGAUUGGCCAAUUAUAUUGUAUUGUAUACUGCAUGGUUACCGUCACAAAAGAUGCGUGAUCCGCUGAUCCGCAUCAUCCAGAGUUAUAUAAUGGGAGACCAAAUGGACCCUGAACAGGUAAAAGGAAGCAUGUCGGGAGCUGCACAAUAUUUCUUCUCUUUCGUUCUCAAGCGCAAUACACAUCCGAUUUGUGCUCUACCACUUACAUCAAUCAUGCACACAUUCAUACGCGAAAAGGAAGGAAUUGCUUCGACGAGCUUGAACAUGCCUAUAUUAUUCUCGUCACACAAACACAAAAGUCAAUCAUAGCGCCACCGGAACAACGAGGAGCCGGAUAAGAUGACUUCUUCAUCAUUUCAUAAUAGCAAACAGGACGCCAGCCAGGCAACGUCAAAGAAAUAAAAAACAGGAGCAGACAAUAUCGUGCAUGCAUGUCACUUUCAGUUUUGGCAAGCAGGCAGCCGGAGAAAAACGGGGCCAGAAAAAUAUCAGCCGCGCUACGGUACAAACCGGCCCAGGCCCGGCGGCCGCGAGAGAGGGUGACGGCCGCGUGACGCGCUCCCGCGUACGGAACGGAGCACGCGUGCGCGAAGUUUCCUCCUCAUCUCAUCCACCCCCUCUCGCAACUCUCGCAAGUUGCGUGCGGCGGCCUCGCGUCGUCUCGGUACCCAUCUCUCGUCCGUCCUGGAACACAGCGCGGUGAUGUGAAAUCUGGGCCUUUUGUCUCCACCUGCAGCCGAAGCUUCGGUCGCUACACGGCUCACACGCGCACGCGCACGCGCUGCAAAGCUACCAGUUGGGGGGGCUCGCGCGGGCGCGGCGCCUGUCGCCUUUGCGGGCGGUGGAGUUUUUGUCAUCAACUUGAGCGUCGUAGCAGCGACUUCUCGGCUUGGGAUUCGGCGGGGACGGGAAAUCAUUGGAGUUCCCUGAAUUUGUCCUGGCAAUGGCAACGCGAGGGCGCUGACUACUACUACUACGAAGGGGAUGAAUCAAGGAUCGCUCGCUCCGAUAAGGAAAAAAAAACUUCCUGUUUGAUCACUAUCAUGUCAACCUCUUUUUUCAUGUACAUGUGCGCCGUAGGCUGUAGCUUAAGAUCUAAGUAGGCGCAUCGUUUCAACGCCGCAUGCCGUUUGUCAAAGCUGCGUAGUUCAGCAAGAGGAGAGAUAUUGUUUUCUUAGAGCAGGUUUAAUAGAUCCUAAUCAGCCGGCGCUAGCACGCUUCGCGUCAGCCAAAUCUGACGUGGAGGAGUGAGAAGAGAAGGAAAAGAAUGGAGCGGGCGUUCCGUUUAUCGUUCGGCUGAAGCGCAACACACGAGAAAAAACUGCUUUCUUCCAACCAAAUGCGAGGAGAUCAGGUGUACAUGCGAAUAUUAAAUAUGUAAAUCUUCAAUAGAGGUAAAUAAACAGCUAACC
Sequence
(OSA-LNCN0695.3):
GUUCACAGGAUGUCCCUCAACUUAACAGUGAGAUUUGUGAGUAAAUUGCAUUAGCGGUACACAAACUUGUCAGGUGGGUGCAAUUUAGUGUAUGAACUUGUAAAAUGCUCGUUUUGGUGUAUAAACUUAUCUGAUACAUGCAAACUAAGGCUAAAAUAGCACGACAAGACCGAUUUUUCUAUGUUGAACAUUAUAAAUUAUAAAUUAGUAGAUGAGUAGACGACUGUGUGCACAUAGUAGUAGAAAUAUUAUAUUUAUAAACUUAGUUUCCACUUUAUCUUUCUUUGUUUCUAUCCCUUGCAUCAUUACUCGGUUUUUGAUUUAUGUAAUCAUUAUGCCUUAUUAUAUGUUUAUCCUUCUUAGACAUAUGUUUACAUAGAGUUUAAAUCAACAACAAGAUUAACAAGAUUAACCUUGCCGUGCAAUUUUGACCUUGUUCGCACGCACCAAACAAGUUUGUGCACCAAACGAGCGUUUUACAAGUUCAUGUACUAGAUUGCACCCACCUGACAAGUUCGUGUACCACUUAUGCAAUUUACUCGAGAUUUUUUUAGUUCCCUUAACCACAAAAUCAGAAAUGUGUAUCCCUAAACUCACAUAAAUCGUGCACUCAAGGUUCUAUGGCAGUAUAUAAGGGUGGUUUCACUAAUGUGGCAUCCUAGACAACAAAAAAAAAAAAGGUAUGUGUGGCCCACAUGUCAGGUGCAUAUUUUUUUCUUCUCAUUCUCUUCUCUUUACUUUCUUCUCUUCUCUUUUCUUCAAGGGAGAGGAGGGCGCUGGCAGGAUAGUGUUGACGACGACGAGAGGAUGCCGGCGGGAGAGGCGGUCGGCGCGAAGACAUCACCGGCGACGAGAGGCGGAGGGAAUAAGUAGGAAGGAGGUGGUGGCGGCUAGAAGGGGCGAGGCAGCGAGAGCAGAUGGAUCUUCAUCUAUGGGCGGCAGCGACGGAGCUUCAUUGCCGCGAGCACCCCGUUGAGACCAACGGCGCCCCACAGCCGACCCUCGGCCUACUUUGGCUUCGUCGUCGACGCCGCCCCCACAUGCCACCCUAGAUCUGCCUUGCCUGGACCACCUAGGGACCUUCACCACCACCUCAUCAACCACCCCACCGUCGGCACAGCCCUCCACUGACCCCGUUGCCUAGCAGCCAACCCACCUCCGUCGUCUCCAUCUCAGACUCCUCCCGGCGCGAGCUCGCGCUGGCCUCGGCCCUCCACUGUCGGCCGCUCCACUCCGCCGCUCUCUCGGCCCUCCUCUCUCGCCAGCGUGGCCGGCCGCCUCUCCCCUCGCCAGCUGCUCUGCCCACCGCCGCCCUCACAACUGAGGAUGAACAACGUUGUGGCCGACCCAACGGUGGACGUUGGGCGGGGUGGCAGCGGGCGAGCGCGGCAGCGGGCGGCGAUAGAGGGGGAGAGAGGCGGCCGCAGUGGCGUGUGUGCGUCGGUGUGGCAGUGACAGUGGAGCUCGGCUCGGCUCGCCAGCCGCCUCACUCCCGUCUGCCGCCGACAACCACCGUUGAAGAGAAGAGUAGAAAGAAAAGAGUAAGAAGAGAUGUGGCCCCCACAUUUUUCCUUCUCACUUAACUUACAUGUGGGAUCCACAUAUUAUUUUUAUUUUUUUUGGCUGACUAGGAUGCCACGUCAGCGAAAGCACCCAUAUAUACUGCCAUAGGACCUUGACCUCGAGUGCACGGUUUAUGUGAGUUUAGAGCUACACAUUUCUAGUUUUGUGGUUAAG
Sequence
(OSA-LNCN0695.4):
GUUCACAGGAUGUCCCUCAACUUAACAGUGAGAUUUGUGAGUAAAUUGCAUUAGCGGUACACAAACUUGUCAGGUGGGUGCAAUUUAGUGUAUGAACUUGUAAAAUGCUCGUUUUGGUGUAUAAACUUAUCUGAUACAUGCAAACUAAGGCUAAAAUAGCACGACAAGACCGAUUUUUCUAUGUUGAACAUUAUAAAUUAUAAAUUAGUAGAUGAGUAGACGACUGUGUGCACAUAGUAGUAGAAAUAUUAUAUUUAUAAACUUAGUUUCCACUUUAUCUUUCUUUGUUUCUAUCCCUUGCAUCAUUACUCGGUUUUUGAUUUAUGUAAUCAUUAUGCCUUAUUAUAUGUUUAUCCUUCUUAGACAUAUGUUUACAUAGAGUUUAAAUCAACAACAAGAUUAACAAGAUUAACCUUGCCGUGCAAUUUUGACCUUGUUCGCACGCACCAAACAAGUUUGUGCACCAAACGAGCGUUUUACAAGUUCAUGUACUAGAUUGCACCCACCUGACAAGUUCGUGUACCACUUAUGCAAUUUACUCGAGAUUUUUUUAGUUCCCUUAACCACAAAAUCAGAAAUGUGUAUCCCUAAACUCACAUAAAUCGUGCACUCAAGGUUCUAUGGCAGUAUAUAAGGGUGGUUUCACUAAUGUGGCAUCCUAGACAACAAAAAAAAAAAAGGUAUGUGUGGCCCACAUGUCAGGUGCAUAUUUUUUUCUUCUCAUUCUCUUCUCUUUACUUUCUUCUCUUCUCUUUUCUUCAAGGGAGGGCGCUGGCAGGAUAGUGUUGACGACGACGAGAGGAUGCCGGCGGGAGAGGCGGUCGGCGCGAAGACAUCACCGGCGACGAGAGGCGGAGGGAAUAAGUAGGAAGGAGGUGGUGGCGGCUAGAAGGGGCGAGGCAGCGAGAGCAGAUGGAUCUUCAUCUAUGGGCGGCAGCGACGGAGCUUCAUUGCCGCGAGCACCCCGUUGAGACCAACGGCGCCCCACAGCCGACCCUCGGCCUACUUUGGCUUCGUCGUCGACGCCGCCCCCACAUGCCACCCUAGAUCUGCCUUGCCUGGACCACCUAGGGACCUUCACCACCACCUCAUCAACCACCCCACCGUCGGCACAGCCCUCCACUGACCCCGUUGCCUAGCAGCCAACCCACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
25.61%
ME_num:
MEP:
59.15%
HE_num:
HEP:
15.04%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.80
Avg Expression:
5.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.24463235451637 | 3.87063133579994e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.97429836659789 | 2.17786868056638e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.1014624510735 | 0.00919902447534616 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.63863131573204 | 5.79689144779584e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.60980241325495 | 0.000334726737250591 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.62421998480765 | 0.000362288459607751 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.12784708275564 | 2.23372815103848e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.92708886900571 | 1.01013837859825e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.06289312853457 | 2.06426656496116e-08 |
| 10 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.08809550241963 | 0.0107537427731036 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.53154393027484 | 2.53697104334233e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.86999645715989 | 3.55617357227347e-17 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.34469859524833 | 0.000161832898820412 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.25427067708011 | 0.0222505770375593 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.77937719056039 | 1.7863773152828e-06 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.66324505517819 | 3.55592514705887e-06 |
| 17 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 5.68072788741802 | 6.43591277829161e-13 |
| 18 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 5.68064406775356 | 6.71633918699635e-13 |
| 19 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 5.68053071714057 | 6.50523580329204e-13 |
| 20 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.71744286521321 | 1.93648371014269e-142 |
| 21 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.14335933181376 | 2.09285974015334e-05 |
| 22 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.6837287165913 | 3.85548059863588e-05 |
| 23 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.54207410793717 | 1.33817341507805e-05 |
| 24 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.29834092028461 | 0.010241164434028 |