Chr:
Chr1
Start:
31034709
End:
31038590
Strand:
+
Ref_name:
OSA-LNCN0687
Sequence
(OSA-LNCN0687.1):
AUCGGUUUCAUUGCGCCUUUCAGUCCCAUUACUGCCACUGCCACUGGUGCCGCUUCCGCUUCUGUCCGCAUGUGCAGGAUCUCUGUGCUGGAGCGGCGACGGUGGGAGAUCUCUACAGUCCACUCUACACUUCUACAGUGGUGUGGCAUGUUGGGGGGCUCACACCGUGUAGCGAAGAAUUGGAGUGGAGCGCGUGCAACAUGCGUUAAUGCAGGCCGCCGUGGGUGGUGGUGCAUGCCGACGCCAACAUGAGCAGUUGAGCAUUCAACUCAACUGGCUACGUGCGUUAAAAGUUUAUCAUCGGAGAGCGCUCUAGCUGACUGCCGAAGGGUGCCAAGGGCCACAUGCGUGUACGAGAAUUUACCUGGCAUGGAACUAAAGACGGCCUGGGAGUCUGAACUAUAAGCCUUUCAGAGUUACAGUAGCUUCCAAGAGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.04%
ME_num:
MEP:
8.74%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
2.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.01701376501089 | 0.000162251278799076 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.77715519370942 | 0.00588870466256401 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.15465128575983 | 5.75170310641233e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -6.13167167431253 | 2.7227273229061e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.41044487655125 | 0.000115615662422165 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.57709840132397 | 6.88213458241988e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.4378790780909 | 0.0004397846544707 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.10967408573694 | 0.0111876408505613 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.57204953684957 | 1.00375570057861e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.54703441323509 | 3.43128859573993e-06 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.96831537520583 | 5.7985724569922e-05 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.71860853637265 | 0.0423404029656798 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.08374428667878 | 4.0193009056534e-07 |