Chr:
Chr1
Start:
30678749
End:
30680938
Strand:
-
Ref_name:
OSA-LNCN0678
Sequence
(OSA-LNCN0678.1):
GUUCUCUAAUCAUGGUACAUUUUUGCAAUGACCAUCAGCAAAUUACAUAAACUAUAGUGAACUUUAAGUUUGCACAUAUGAGAGACUAGGCGAUAUAUCUUGAUAUUCAUGUACUAAGGCGGAGGCUCAAAUUCAGUGGACAUGUCCCACUACAAAGGAAUUUUAUCGACAAAGCUAGCUUGAUAGUACUAAUUUUAAAUCAUAUGAAUUUAAAUUGUUUAUUAUUAGACACUUAAAAAUAAAAUAUAGGUGUAGUAAGUGUAAUAUAAACAUGCCACAUGGGUUUUGGAAUAGGACAACAACGUUUGAAUUCUACACUAGCCGGAAAGUUGGAAUUCCAAAACCCGUAUCGUGGUAAUAUCAUGGAAUAUUCCAAAACAUGGAAUAGUACCACGAUAGCAACAUUAUACUGGUCCAAAGUUCAUAAUUCCAGCAGGUGUCCUGUUCACAGUCGUUGUCAUCCUAUUCCAAAACCCAUGUGUACUGUCUAUAUUACACUUACUACAUCUAUACUUUAUUUUUAAGUGUCUAAUAAUAAACAACUGUCCAUAGUCCAAAAUGUAUAUGACGUUUGGAAGGUGACAUGCUGGAAUUUUGGACUUUGGACUUUCCGCUAGCUAGUAUACUGGUACAUAAGAGUACAAACUACUACUAUUACUAUUACUAUCAGUUUGUAAGUGAAAAUCACGAUCACAAUAUGUACUACACCUACUAAGCCGUAACACAUAUUAGCAAUCCAAAAGUAUUUUUAAGGUAAAACUUAUAUAUUUUAUAUGUCUUCUAAAGGCACCCACAAUGUAAGUAAAAAGUAGUCCUUAUAGAUCCAUAUGAGUACCUUUACUAUUGUAAGAAGUGGCAUUAAAGAUCACCCAUAUGAAUUAAAAUGUAUUAUCUCUCAUCUUUCUUCUCUCUGCGUGAGAAAACCAUGGCACUUGGAUGUGAUUUUUUUAGAUGUGGGUUCUACCUUGAUGUCAAGUACUAUCUUUAUACAUUGUGACAAUUGGAAUAACAAAUUCUCAUAUAUAUCUACUUAGUCUAUAUACAUUAUUGAUUCCCUAAGCGACUUAAAAGCCAAAUCUUGAAAAUAAACCAUGAAAAAAAUACAUUCAAAUCAACUCUAAAAACUAGUAAGGUGAGGAGCAAAUGGUGGAGUAUUACUUUUGAAGAGCUCGAUUCCUCAAAGUUACAUCAUAGAGUCUCUGUGUACAACAUAAGGAGUGAAUAAGUAAAUCUUUUUGCUUAAUUUAGACUAGUCUUAUUACUCCAUCUGUCCCAUUUUAAAACACAACCAGUUUCUGUAUCCAACUUUAAUCGUUUGUUUUAUUUAAAAAAUUUUUGAAAAAAAAUAAAAAAUAUAAGUUACGCAUAAUGUAAUAUUUAUUUUUUAUCAUUUAAUAACAAUAAACAUACUAAUCAUAAAAAAAUUUAAAUAAGACGAUGAUCAAAGUUAGACAGAGAAACUCAUGACUGCAUUUAAAAUGAGACGGAGGGAGUACUAAACAUCUGCAGUUUGGGCUAGUGGCCCUGCACAUCAUUUCCCAAAAAUCUUCUUCCUUUUUGGUCCUUAUUACCAGCCUCUCAGUUUUUCCACGCUACUGGUGAUGACUCUUCUCCUCCGCCACAUGGAGAUAUUUAACUAUUUGUAGAUUUUGGGCGAAGCAGGCAAUGGCGGAGCUCAAUAGCACAGGGCUCCACGGCUUGAACGGUACUGCCUCAAGGUAUGAAGGGAGCUAGAAAAACGAGGAUACGGAGUAAUACCGAAGAGAUGGCACGUCUCAGCCGGCGGCACGCUACUGCAGAGCCUACCGGAGUAGCAGAAUCCGAUGACAUCAUGGCGAAAGGUGGGUUAGUUGUACCGGCAAAGGCAUCUUGUGGGCGUUGCGAGAUGAGCAAUUGCCGAGUUGACGAUGCAAACAAGCAUGAACAUACGCUGCUCAUUGCCAAGGACCAACUUGGUCAGCACGCGGCUGCCCUCACUGACUCUCCAAGUUCGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.54%
ME_num:
MEP:
16.26%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.91
Avg Expression:
1.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.68183227570565 | 5.15746568244284e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.35768705324836 | 0.000122890362641456 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.99315409945169 | 1.46613059184936e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.34105097963477 | 0.00264464200179796 |
| 5 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.62498752332814 | 0.000683104445369809 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.05779651495943 | 0.0260567228811088 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.91091813589522 | 0.0140921773046468 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.89443150348597 | 0.00247655868578188 |