Chr:
Chr1
Start:
30611956
End:
30612790
Strand:
-
Ref_name:
OSA-LNCN0674
Sequence
(OSA-LNCN0674.1):
GUGAUCUUGAACUGGACGGUACAGAGAGAACAGUACUAUGAAAACUCGAAAAGCAACAUUCGAAGCAAGACUGCAAAAAAAUGUGGAACAUAUUGCUGCAACGCUCGAACGUUUGAGCUGUGCUUCUAGAGGAAAGGUGAUGCAGCGAGGGCACCAACUAUUAGUAGGUCGCAACCUGCAAAGUCAGGAGCAAAAAGGUCAAAUCUCUCUUUGUCAAGCCUCUCGAGUAGACGUGCUCAGAUGAGCAUGACCAUUAUUUUUCCAGAGAUGGCCACCAGUCUCAAAGACUCCAUGACAAGCAGGUUGAAACAGUGAUCACUUCUCUGCAGGUAGCUGAAAGUUUCAAAAUGUAUCUUUCAAAAGGAUGUAGAUCCCAUUAUGCUGAACAGUCCGUUCCUUCACUAUAAAGUUGUCGAGCUACAAUAUCCAAAAGUGAAGAACCUGGCUACGACCCUAUUGCCUGCUGUACACCAAUGGAAGGAAUAUCGAUACUCCAAUGGAACAUCGAUGGAAUGACGGGAACAUCUUUGACAACUUUGCUUCAUGCAAAUGCUUCCGUGGGAAGCUUGUUGAUGUAUUGUCCUCAGAUACUAGAUUCUUCACGAAUGUUCUGUGUCGUUCACCUACUGAUGUCUCCGUCAUAAAACUGCAAGUUCAUAGCAAUCCCAACUGAAAACAUCCAAGCACUCUAGUGAAAACUUGUUAUCUAAGCAGUGUCGUGUGAACAUCGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.67%
ME_num:
MEP:
44.72%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.85
Avg Expression:
2.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.75604718542375 | 0.000684300260488438 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.04853181113066 | 1.47620369627102e-07 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.03233385541009 | 0.0135932003838469 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.19460384918315 | 0.000770674692957344 |
5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.36861486934532 | 0.0135022909555392 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.08661005474039 | 3.19134676625618e-10 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.65712874251265 | 0.00159424048414225 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.50001665560733 | 5.03038230921002e-11 |