Chr:
Chr1
Start:
30491099
End:
30491735
Strand:
+
Ref_name:
OSA-LNCN0668
Sequence
(OSA-LNCN0668.1):
CAAUGAGUAGCCAACGAGACAAACAACCAUGUAGAAACAUAAGAACCGUAAUUUAAUCAGGAUUCAAAUACUCUUCAGAAACAUAAGAACUGUAAUUUAAGCAGGACUCACAUACUCUUCCACCAAUCUAUCACACGCGCACACACCCUUUGUGGUGAACAACAUUCCUGUGUAAUGUGUUCAACUAUCCUAUAUUCUCCCCAUUAUAAAACAAGAGCACCAUAGAAUGUUCACUUCAAAAUCUACGGUCAUAUCAGUCAGAUGAAAAAAAAAAACAAAAGUAAGCAAGUUAUUUUGAUUUUCCGUGUAGUCUAUCGUGAAUGCAAUGGGACAUUUUUUUUUACUUUCCAUUUUGAUUUCCAAUUAACACAGUAUGCUCAUCUCCAAAAAAAAAGGGCAUUAUUAAACUCCACGUGGUCAGUUCAAAAGGGGGCUUACCAUAGCUUUUGAUCUCUAGAAAUCAUCUAUUGAGAACACAAACUGCCCAUGGCUCAUCUCUAUAAUUCCACAUGCACAAAUGACUUUUAUUUAGACCAGUACCAUAUGCUAACGAGUAGUCAUAAGGGAAAUACUAGAACAAGUUGAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.55%
ME_num:
MEP:
76.83%
HE_num:
HEP:
13.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.70
Avg Expression:
7.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.24657673569459 | 0.0184018603364737 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.19414637361656 | 0.0497705659082528 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.21536344208266 | 6.8927544113762e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.62730728004687 | 0.000783117761788318 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.83606299147421 | 6.20468233810641e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.47333777707859 | 0.000807147017259496 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.698872623818 | 0.000711740185749534 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.94204472857097 | 3.64182747392918e-07 |