Chr:
Chr1
Start:
30471106
End:
30471485
Strand:
.
Ref_name:
OSA-LNCN0666
Sequence
(OSA-LNCN0666.1):
UUGGGAGCGUAUCCUAUGCACACAGGCCCUCACGUGUACACACCGUGUACACCAACUAAAAAUUAUCACAAAAAAUUCUAGGAAAAUUAAUACAUGUACUUUCAAUAGUAUUACAUCUACGUGCAAAGUCGCAUAUUCAAAUUCAUUCUACAUAGAGAAUAACAAAAAAGAUAAAAUUCUGACAAAAUUGUAACCUUAAAACUGUCAAAUUUUUUGUUUUUUUUGUUACGGCUAAAAUAUAAUGAAUUUGACGUUAAGAUUUUAACCCUAGGUGUAAUACAAUUGAAAGUAUGUGUAUGAUUUUUUCUAGAUUUUUUGGUGACAUUUUUUAGUUGGUGUGCACGUGUGUACACGUGAGGACCGGUGUGCAUAGGAUAUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.79%
ME_num:
MEP:
11.38%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.96
Avg Expression:
3.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 3.38911266005825 | 0.0354246634517149 |
2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 4.87725982424761 | 3.27411139821865e-08 |
3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 4.40238849896377 | 1.20424560825797e-05 |