Chr:
Chr1
Start:
30477299
End:
30478003
Strand:
+
Ref_name:
OSA-LNCN0665
Sequence
(OSA-LNCN0665.1):
GCCUCCGCUCGCUGCGGCCGCCGGCCUCCGCACGGCGCCGCCGCCGCUCACUGUUCUCCGCCGGAGAGGAUGUAGUAGUCCAGCUGAGGGAGGAAGAAGUAGUACUAGAGAAUGGGUUGGAAGAGGAGGAAGAAUAGUAAUAGAGACUGACAUAUGGGUCCCAUUUGUAAUAGACUUGUAAUAGAAAGGGUAGAUUGAGAGGUUGUUGAAGUGAACAACUAAUUUGACUAGCCAAAUUAGAUGGAGAGUUGGCUAUGUGGGUGUUUGGAGAGUUCGAUUUGGAGAGACUGUUGGAGAUGCUCUAAGGCCGCAAAGUUGCAUUGCUGGGCAAAUCUCCUUUGGCAGCGGUGAACUGGUGAUUGACCGAUCACUUGCAGACCGGUACUGCCGAUUCGAACACUGCCAAGGAAGACUCACCCGGUAAUGCAUGUGUCCUGCUCAUGCAAGCUUCUGGGGGGUGCCGCGGUGGACGAUGGAACGAAAUCGGUAUCUUUCGAUUCGGUCCUUGUAUAUGUGUUUUGGACCCUGCUUUUCAUUUGAUGACUCGUUAAUAUAACUCAUGUUUGUAACAGCUUUGCACUUGUGGCAGUAAAAUCGACAUUCAUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.42%
ME_num:
MEP:
47.76%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.79
Avg Expression:
2.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.13341781134029 | 0.0368421808373656 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.05715498586397 | 0.0426299739155655 |