Chr:
Chr1
Start:
30256117
End:
30257561
Strand:
-
Ref_name:
OSA-LNCN0663
Sequence
(OSA-LNCN0663.1):
CUAGCUACUUCUCCCUUCUCCGGCGUAUUCAACACUCGCAGGCGAUUCCGAAGAAGAUUUGCGCCGAACACGAGGGCGGAAAAAACGAAAGCAUCGCGGAGUAAAAAAUAACAGCUGAGCUGACCCGAAUGACGUGGAGCUACCAAUAAUGGAAACGGCCGGGCCGCCGAAGACACGGAGACCCGGACGCCCGUCUGUUGACCGCCCACCGUCGAUGACAGCUCGGCCCGCGCCUCCAGGGUGGCCCACUUGUCAGUGACCUUCUAGCACCUCGUUGCGCGUGAGAAACCAGCGGGGUAGGAGCGGAUUAGGAAAGCCGCUUGGUUUAUCCAAGAGAGUGGCGACUUGCUGGCCUUUUUGUUUAAUAACCACUCACUCCGGCGUGUACGGGGUGCAGCAUUAGUGUUGAUUAGCCAGCGGAGUGUUGAAACCCAACUUAAAUUACCCAUCGAUCGGGUGACGGGUCACUGUCGGUGGGGCCGGCGUAACGCACGCCACUCAUGGGCCCACCUGUCAGGGAGCGCUGGGCCGGCGAGCAGCUAGCGCGCGCCUUUCGGACUCGUCUUCGCAGCGGGAUACGUGGCGCGACGGGGGCCGCACGUCAGGGUUGGGGGCUUCGAGGUGGCUCCCAUGCACGAGCCACGUAUCUACGUUUAAAUAAGAUAACGUACGGUUUAAAAUAUGGCGUGCAGGGGAGCAGAUGAACAGGGCAUUCGGCGUGAGUUCUUCGAGCUCGUGGGUUCAUGUACCUCACGUACUUACCCUUACCCAUGCUCGGGAUUAGAUUAGUUUAAUCGCGAUCUUUGACAGAAGGUACUUACUAGUUUAAUCUUCUGCCGGCUUAUGCAAAUUGCUGGGUGACAGGGUGAGUGGACUGGACAGUCAAUCAUACUGGGUCGUAGUACUGCCCUCCCAGUGGAUCGGGCCGGACAGGCCGGCCGGGGCCCGUUGUGCCACGUGAACUGAACAGUGGCGCCGCGCGAGCGGGUCAAAAGGCGGAGCCGAGUAGCCGACUGGCGACGGCCACUGGCUCGGGGAGCAAGCGCAUGACACGUCGGCACAAGUGGGGUGGGCGUGUAUCGGUGGAUGAUUUGGGGCUGAGACUUUUCAAAAAUGUUGGAACUACGGGGUAACGGAGUAGAAUUUAGAUCACUCACGUCGGCCCUACAAGGGAGAGCGAUGCAGCGUUGGAUCUGAAUUAGAUCACCAGGCCACCAGGGUCCGCACAAGACAGCAGGGGGAAAUGGGGGCCCAAGCAAUUUCAUGAUCUUCUUUUUUUUUUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.58%
ME_num:
MEP:
25.61%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.87
Avg Expression:
2.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -4.06644862013881 | 0.0132065195325747 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.05276038903863 | 0.0405670013288476 |
| 3 | 9L136 // leaf // control--/--9L136 // leaf // salt | 2.07886904668611 | 0.0205022138372335 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.90113088558639 | 0.00546842405572374 |