Chr:
Chr1
Start:
30297105
End:
30297986
Strand:
-
Ref_name:
OSA-LNCN0662
Sequence
(OSA-LNCN0662.1):
GAAAAAUGGGUGUCGCGGAGCCACUACUCGCUCGUCACCGUCCACCGCGUCGCCGACUACUACUCCUCUCUCGUUGCCAUUCAUCACGCUGUCGGCUACAGCGUCUCUCUAGCUUGCCGCUGCUGUUUGGGCACCGCAGUCCGCCAUCGUGCCCGGCCAUGGCCACUCCUGGCUGCUCUACAAAUUGCAGGUUCAUCAACACUUGUGCGUGCGUCUGGCUUCUGCACCAGGCAUGAAGCUGCCGUCGAUUCGUUCCCUGCAUAGGUGUGUAGCUCACCAACAUCAAUGGUGGAAACUACACUUUCUUGCCGACCAUGUUGAAGAGUGACUAGCAUGGUGUGGUUGUUGGACUUGGCAGGCGGCGUCCUCGGCGAUAAGACCAAGCAGGCGGAGGCGGCGGCGGCGACGACGACUGAAUGGUCUUCUGGGUCGAAGAUGGAGAACGAACUGGCGCUACGAACGAUUGGUGCCGUCAGAUGCGCUACGAACAGUGAUCCCGUAUUGGACGUCCCUCUGACGUAGGAUCUCGUUCCGUGUUCUAUGGUAGUCUUUUCACCGUCUCUAGCCUUGAAACCUCAAUCCUAAUAUGAAGGAAGCCUACCGAGGCUUGCAGAAGACAUCGCCGUUACAAGUUCUCACUUUUCACCGUCUCCUCUCGGAUGUUGAUCAUUUGCAGCACAGGACAGAGCUGAUCCUGUGUGAACGGCAUUAUGAGUCUGCUACAGUAACUACUGCAUGGCACAGUAGUACAAUUCCUGUCAAUACAGAGAUUUUGUGUGUGUUUAGUUCACGUCAAAAUUAAAAGUUUGAUUAAAAUUGAAACGAUGUGAUGGAAAAGUUGGAAGUUUGUGUGUGUAAGAAAGUUUUGAUGUGAUGGAAAAG
Sequence
(OSA-LNCN0662.2):
GAAAAAUGGGUGUCGCGGAGCCACUACUCGCUCGUCACCGUCCACCGCGUCGCCGACUACUACUCCUCUCUCGUUGCCAUUCAUCACGCUGUCGGCUACAGCGUCUCUCUAGCUUGCCGCUGCUGUUUGGGCACCGCAGUCCGCCAUCGUGCCCGGCCAUGGCCACUCCUGGCUGCUCUACAAAUUGCAGGUUCAUCAACACUUGUGCGUGCGUCUGGCUUCUGCACCAGGCAUGAAGCUGCCGUCGAUUCGUUCCCUGCAUAGGCGGCGUCCUCGGCGAUAAGACCAAGCAGGCGGAGGCGGCGGCGGCGACGACGACUGAAUGGUCUUCUGGGUCGAAGAUGGAGAACGAACUGGCGCUACGAACGAUUGGUGCCGUCAGAUGCGCUACGAACAGUGAUCCCGUAUUGGACGUCCCUCUGACGUAGGAUCUCGUUCCGUGUUCUAUGGUAGUCUUUUCACCGUCUCUAGCCUUGAAACCUCAAUCCUAAUAUGAAGGAAGCCUACCGAGGCUUGCAGAAGACAUCGCCGUUACAAGUUCUCACUUUUCACCGUCUCCUCUCGGAUGUUGAUCAUUUGCAGCACAGGACAGAGCUGAUCCUGUGUGAACGGCAUUAUGAGUCUGCUACAGUAACUACUGCAUGGCACAGUAGUACAAUUCCUGUCAAUACAGAGAUUUUGUGUGUGUUUAGUUCACGUCAAAAUUAAAAGUUUGAUUAAAAUUGAAACGAUGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.04%
ME_num:
MEP:
8.74%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.95
Avg Expression:
2.81
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.0257418212465 | 0.00589792265620075 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.13087867133314 | 0.00347209686233755 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.27940315092138 | 0.00245677839179411 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.25993356187023 | 0.0391865993051642 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.51679981473614 | 0.0165426068611933 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.68421024498083 | 0.0128065008520733 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.99127776847778 | 0.0325358117732461 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.49379144388177 | 0.000893802041017954 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.09365202479287 | 0.00294209346524881 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.61824258209141 | 0.00533969093926024 |
| 11 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -4.03914741226956 | 0.00202453069356638 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.98004911123785 | 0.00620665448676816 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.71644756514084 | 0.000491506220285486 |