Chr:
Chr1
Start:
28418712
End:
28419413
Strand:
+
Ref_name:
OSA-LNCN0632
Sequence
(OSA-LNCN0632.1):
CGGUGCGGUGCCUCCCUGUCGCGCGCGUGAGAUUGGGACGCGCCGGCGGAUGGGAAAUCCACCCAUCCAUCCGUCCAGUGGUGGGAGCGUGGGCAGGCGGCGUCGCGUUCCGUUUCCUCCCCACGUCGGGUGCGCGCGGCUGCCGCGCGCGGGGGUCGCGGAGGAAACGGGGGCGUGGCGCGGGCGACAUCACGAGGGCUGUGCAAGUUGCCGUCGUCGGGUCGAGCCGCCGCCAUCACAUGCGUCGCCGCGCGCUCGAGGUAGGCAGGCGGGGCGGGCGCCGAGGGGGCCCCCAGGCCGCGCCCAUGGUUCCGUGCGCCUUCUUUGCGGAGGUUUGGGCGUUUGGCGUCCGGGGGGAGUUGUCACUUGUCAAUGCUGGGGCAAAAUUUAGCCGUGGAUAGCAACAGGCCGAGCCAGGGCGGAAGCCGUAGCUACCGGUUUCGCGUUUGGCGACUUGGGUCGCCUUCUCGACGGAACAAUCGGUUAGUUCAGGAAAUCAACCGUGGAAUAAGAAUAAGGACGACUAACCGAUUUUGCCAACGAUCAAUUUAUUGAGACAUGUGAUGAUGCGUAGUAAGCAUAAUACUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
90.85%
ME_num:
MEP:
8.74%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.94
Avg Expression:
0.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.19200237977777 | 0.0333765205303186 |
| 2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.94979951801845 | 0.00621342767824458 |