Chr:
Chr1
Start:
27732387
End:
27732885
Strand:
-
Ref_name:
OSA-LNCN0620
Sequence
(OSA-LNCN0620.1):
GUCGGAGCGAGCGGCUUUGUUUAGCUUUGCGCUCGCGAAUCGCGAUCCCCACCCAAAUCUCAAAACACACUCACACAGGCCGGAGUUGAGUUGGCGGUUCGCUCGCUCCAACAACCUCAGCAAUAUUUGAUCGAGUUGGUGGUGUAGUGUACGUACGUACGUGCUCGGCUAGCUGGCGCUGCAAUGCAAACCACGCGAGCUGAGGCACACUAGCUACAGUAUCUAGCUGUGUCUAGCGUACGUAGGCGGUGCAAACAGGAACGAGCCAAGUAGUCAGCCCGGCCACCCAAAUCACAGGAGUGGGCCAAUACUCCCUCCAUUCUAAAUUGAUCUACAUAUAAUUUUUUUAGGUUAUUUCUAAAUGAUCUACAUAUUUGUGUUCAUUCAUUAAGUCUAUUCGUUAUUUGUGCAUUGGAGUAAAUGACCAUUGAUGCAUGCAUCCAUGCACAAUAUCUUGAUUUGCUAUUGGUUAGGAAAUAGUAGGGAUGAUGUAUGCAUCGAGUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
62.2%
ME_num:
MEP:
36.18%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.87
Avg Expression:
5.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.51773244882642 | 0.0317985318909712 |
2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -4.15664470685213 | 0.0478828214841018 |