Chr:
Chr1
Start:
27591455
End:
27599613
Strand:
-
Ref_name:
OSA-LNCN0613
Sequence
(OSA-LNCN0613.1):
CAUCGGCUUAAUACUGAACGAUACGUCAUCGGCAACCCAGCCGAUCGGCUGUUGUUUAUAGAUUUAACUUUGUUUCAUCUUUGGUUUCUUGUUGGUUGCAGGAUCAAACCAAAUAGCACGCUCAAAACUCGAAAGCAAUUCUUUGGACCUGCACUGGAGCUAAGCAGAACUCCCAGUGCUUGUUUUUUUCCAUCGACACUAGGAUAAUUAGGCCAAGUUCGGCAGGAGAUUACUAGAUGUCUGAGUUGUCGGCUAUCCUGAACUGGGUAGGCAACUUGCUGCCUGGCAGCUGUGGCCCAUUAUCAAGCCAUCAAGGGAUAGAAGAGACCAUGAGGGUCUUGCUUCAGUGAGAGAUGCAAGAGGGAGCAAGGACAUGACAGCGAGAAAUGCUGUUGCCUUUGCAAGCCCAGAGGUUGGCCCUGAUUCUGCUCCUCCAGUAUCAUUUGCCAGUCCCCAGCACUGCCAUCCACCAGAGGAAGCUGUCAAGUUCACUUGCCAGAUACUAGUUAGUUUCCAACCCAGAUACUAGUUAGUCCCCAGCACUGAGGCAGAUGUGUGAUGCCUUUGUUGGAAAGCUGGUGAUCCCAGUGGUCUUUUCUCUUUUGUUUUUGUAUGAACUUGAACAACUUUGGGCUUGUUUUCAAACCAGGUUAUAUAAUUACCUGACUUCAACAUAAAAAAAAGUAACUUCACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.33%
ME_num:
MEP:
15.85%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.94
Avg Expression:
2.25
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.86075634113975 | 0.0277911831459995 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 6.46051780794518 | 2.94142894161976e-07 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 4.94234989335388 | 0.042853733008622 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.65563927340106 | 0.0350295981805206 |