Chr:
Chr1
Start:
27623480
End:
27624035
Strand:
.
Ref_name:
OSA-LNCN0612
Sequence
(OSA-LNCN0612.1):
UGGGUAACGCCAGUUUUUUUUUCAAUUGUUAUUUGAAUAUUGAUUUCACGCCAAACUCACCAAACUCAUCAAAAUCACAAAAUCAUCAUAAAUUCCAAAUCGAGUUGCUCCCUACAUCUCCAAAUCAAAGUAACAACAUCACAAAUCAUAAGAUUCAUGUCAAAAAUUAUCAAAAAAAUACAUCACAAAUUCUAAAAAAAAUUACAUCACAUAUCAAAUAACACAGAUCCAAUGAAUCACAAAUUCUUUUUUAAAAAACAAAGAAACCCCCAAAUCGAGUCCUCCACUUGCCGCAAGCCGUCGUCGCCUCCCCAGCCCGACGGCCGCCGUCGACCCCGCCCGGCGGCUGCUGCCCCUUCUCCCGUCGACUCCGCUGUAGAAGAUAUGUGGAUGAGGAAAGAGAGAGUACAGAGUCAGCGAGAGAAAUGGCGAGAGAAGAUAUGUGGAUGAGGACGUCUCGAUCUGUCUAGCGCUAAGAGAUAAGGAUGAGGAAAUCUAAGUAUGUAGUCUCUGGUUCGAUCUAUUUAACACAUGGGAGGGAGAUAUUUAGUCUCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
40.45%
ME_num:
MEP:
19.92%
HE_num:
HEP:
39.43%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.81
Avg Expression:
26.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.8147400468186 | 0.00929300276840377 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.62809166310388 | 2.82367487108182e-26 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.39904335497434 | 0.0107381820210232 |
| 4 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.60138927802255 | 8.61603215680952e-05 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.49881817356234 | 0.0116189471226531 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.00147025835625 | 0.00367484478564477 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.10625765396148 | 5.98567476318172e-20 |