Chr:
Chr1
Start:
27385775
End:
27386536
Strand:
-
Ref_name:
OSA-LNCN0601
Sequence
(OSA-LNCN0601.1):
GUAUGGAGGAAGGUGUUUGCUUCCAUUUAUGAUGCUCUGCCUCAUCCUUAUUUGAUAUCCACUUGUUGCAAAGGUUCUUUCGUGGAGUCAAAUUUGAAUCCAUGCUGCAAAUUCUACAUGCCUAAACCAGUAAACCGGGAAUAGUUAAGUGCUCCUUCAGGACAUUGUCGCAUUGCAUUCAGUCCUGGCGGCUUUCAGGUAUAUGAAACUUUCACAUUUUUGAGAGCUGCCUCAUUAUUUCUCAAUACCAACAUUCUGUUUGGCGUGGACGAUUUGGAAAGAAAGAAACAAUCGGGUCUUCAACCAAAAGAGUAGGACAUGGGCGGAAAUUGCUAGGGCCAUGACGGGCGAAGCAGACCUUUGGCGGUUGGCUAGAGCCGCGAUACCGGCCAUGGCGACCCCUAUGUCGGGUGGAAGGUCGCCACAUUCGUUGGGAGAUUAGGCUUUUAUUUUCUUCCUCCUCCCCCCUCCUGUAUCUUGUCCCCUUCGUGUUUUUGAUUUUUCGGCCCGCUCUGUAAAUACUUUAUUCCUUAAUACAAAGAUGCGUCCCUCGCGUAUCCCAAAAAAAACAUUCUGUUUGGUGCUGCUAGCUAUAUGGACUCUAGAGUAUAUAACUAUAUAUGGGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.24%
ME_num:
MEP:
39.63%
HE_num:
HEP:
57.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.69
Avg Expression:
19.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.23701093912325 | 0.00985555694572457 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.37952775327023 | 0.0221871060146853 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.06973798574329 | 0.000369504212279459 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.50073464381804 | 0.00252987886333431 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.17437749082746 | 0.0195706260037479 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.01029971240448 | 0.0192515319791427 |