Chr:
Chr1
Start:
27044077
End:
27045514
Strand:
-
Ref_name:
OSA-LNCN0591
Sequence
(OSA-LNCN0591.1):
UUCUGAUUCUCCUCUUCCCCAUCUUCUCUGUCUUCAUCUCUCUCCCCUCUCCUCUCUCUCUCUUCUCUCCGGUUGACAGGCGGCGGGGAGAGGGCAGUGGCCGGCUGGGAGAAGGGGCGCGGCGCGGCAGCCGGCGGGAGGGAAACUAGCGGGGAGAAGGGAACUAGCCCGGCGGCGGAGGCGGCGCCGCCGUGGCCAUGGCUGCGGACGACGUCGACGUCGACCUCGGCAUCCUCGGCGACGAGAUGAACGUGUCCCGCUGAUCGGCCAACACACGCGCGCAUCCUCGGAGGCGGCCAUCCGUGCAGGCGGGUGAGGGGGCCACCUCGCCGGCGGGAGAGGGGAGAGGCGGUCGGCCGCGAAGACCACCCUAGUGACGAUGAUUCCAACUACAACUCCUAGUGACGAACUCGAGGUCGACGACGAGGACUCUAACUACAACUCCUGCUCCGCCGCUGCCAACGACACCGCUAAUCCCGUGAGUCCAUGACGACCUCGCUCACCUCCGACGGCCACGUCGUAAGCGUCUACUUCCGCCUUGAAGCGCCCCUGGCGACGUCACGCCUGUGCCCCAGGCGGCCACUCUUCUCCAUUUUCGCCGCCGUCGUCGUCGCCGGCCGCAUCCCCUAGCACAAGAGAGAGAUGAAGAGAGGGGAGGAGAGAGAGGAAGCAGAAGAGGAGGGGUGAGUUAGAGUGACAUGUGGGGUAGCGUGGGUCCCACCAUCAUUAUUAUUAUUUUUGUGUGUGAAACUGAUAUGUGGGUCCUAUGGGGUUUAUUAUUUUCCCGGAUCAAAUUGCCACGUAAGCGCCACGUCAUACCACGUCAGAUCGAGACCGAGUCAAAAUUAGCCACGCAGACGCCACGUCAGUCAAAACCGCCAUCGAAACCGUCGAGGGACCUGAUAUGCACCGGCGUUGUAUCUAGUUUUGCGGUUGAAGGACGAAAAUCAGAUUCGUUGACAAGUUAAAGGACCUUAGAUGAACUUAUUCAAAAAAACAAAAGGAAGAAGAAGAAACAGCUUUCUAUGAGCUUCCCAUGAAGUCGAUGAGCUCAAAUUAUUUGCUGCGAGAAAAGAACUCAGUGCUGUGUUACAAAUCGAGUCAUUUUGACCGCAUGACUUAUUGACUUUCUCCCAGUGCACGACACCAUUGGCAUGUUGAGGGGGCAGAUGCCAGAUGAGGAACACUCCUACAGUUAACUUUUCUUCAAAAAAUUGUGCAGGGUAGACAGCCUCCCAUUGCUACAUGGGUCGGUAGAUGCGUAUCAUCAAGGUGCCAAAUGGCCAAUAGGCAAUAGCAUCAUCAACAAUUCACAUCUUACAUAUUACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.14%
ME_num:
MEP:
52.64%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.83
Avg Expression:
2.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.54193200926957 | 0.000221257915708439 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.44551283384758 | 0.000153201407002481 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.73377021710335 | 0.0139355675901756 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.29074157057043 | 0.03653586980799 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.53581897811634 | 3.85226344120825e-05 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.76417336536403 | 9.89509714705082e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.20937057847078 | 0.0206676306921572 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.49768758372676 | 0.00204427516922842 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.41761808558118 | 0.0133772766503665 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.36624650390978 | 1.87431495847607e-05 |