Chr:
Chr1
Start:
26904595
End:
26907237
Strand:
-
Ref_name:
OSA-LNCN0590
Sequence
(OSA-LNCN0590.1):
CUCAAAUUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUUCCUCAAAUCCACCACCGCCGGCUGUCGUGUUCCCUUCGCUCCUCCACCGUCGGCCGUUGUCCUAGCCCAUGCGCCGUCCCCAGCCGCCGCCGGAAGCGCCGAGCCACCGGACCGUGCGCACCGCCCCUUCUCUGCCUCCCCCCUCUUUCUCUGUGGCUCAAGGAAGAAGAAGAGAUAAAAGAAGGCUAUGACGAGUGGGCCCCACUUCUAAAUAUACGUUCGACCGUACAGCAAAUUCUAUCGACAUCCAAGGAGCUUAUGUGGACCCAGAUGGCUACGCUAAAACCACAAGAAUCUCGAGGCGUGAGGCAAGACAUAACUAAAAUUUUGAUCAUAUAGAAAACUCAAUAUAAUCUUCAGUUUAAUUUUAUGCAUGAUAUAUUACUCAUUUAGCAUCUCAUCGGUAGAUGUUAAAUGCCUUCAAGCAUUAUUACAUGAGGUUAUAGAAAGAUACAUGGUUAUCAUUUUAUGUGGUUUAUUAUUCAAAUAUCUUUACAAACUUAGGAAUCUGGUUAAAAUGGGCAUUUGAGUUGAGGUUGUGAUUGUUGAAAGUUGUGAAUGUUGGAAUUUAUGAUGAAGUUUGUUGGUAUGGAAGUUUUGGAUGUUGACAUAAUUUUUGGUGGUUUAACUGGAUUAUAAUUACCCCCUUAUACCAUGGGAAAUGACAUAGUUUGCGCCCAUCCACACGACCAAGUAAUUGGACUUAGCCUAGUAUUGUCCCACUAUAUGAAAGACUGUUGGGUAGCUCAUUAGGAGCAGUUUUUUGGGGUGAAUCAUGCGUAAGGUGUUUGGGCGGCAUGAUUCACAACAGUGGGCUUCAUGAAAGUGUGACGAUAUAGUAACCUUGCCUAGGCCUGGCAAGAGUUCAACCACUAUGAUGAACCAAGACCCCACUGUGCAGUAACUAGUAGUAAGUGGGACUCUCGAACGGCUAUGGUGUUUACAGCCUUUGCAAAUUGUUCUCAUCGUGUGGGUAAAGCUAGGCAAACACUACAUAGUCGUACCGUAUUCGAAUACACCAUGCUCCCGAUUAAGGAGAUAUGUCAUAAGGGUGAUUCCUACUCCUGAAGUAUAAGUAGUUUUAAAAAAUAAAUUUUGAGGAUAAGAAUGAUAUAUGAUUUUAUUACUCCUUUAUUUACUCAUUGUUUCAUUUAUUCAUAUCUCUUCACCUUUAAUUAUUUAUAAUAUGUCUUGCUGAGUACAUAAGUACCCACUCUUGCAUAAUUUAACAUAUAGAGAAUUGUGCUAAUAAGAAGACCAGAAGAUAGCGAGGUCUACAGCAACAACAAGUUUUUCUAGGAUAGUCUAGCUUUUGCUUGUGGAGUUCAUUAGUUGUAGUUUAGUAGUUUAGGAGUUUGGAUUUUCCUUGUAUUUUCAAGUAAGGAUGUAUUAGUGUGGAUCUCUUCAACCUUUAACAAUUGUAUAAUUAGGUUGUAUAAACAAAUUUGUAUAAUUAAUUGAAAGCUG
Sequence
(OSA-LNCN0590.2):
CUCAAAUUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUUCCUCAAAUCCACCACCGCCGGCUGUCGUGUUCCCUUCGCUCCUCCACCGUCGGCCGUUGUCCUAGCCCAUGCGCCGUCCCCAGCCGCCGCCGGAAGCGCCGAGCCACCGGACCGUGCGCACCGCCCCUUCUCUGCCUCCCCCCUCUUUCUCUGUGGCUCAAGGAAGAAGAAGAGAUAAAAGAAGGCUAUGACGAGUGGGCCCCACUUCUAAAUACUACUGUGGACACUUUACGCCUUCUGUGGAGACGUUCGCGUGGUCUCAAACUCCUACAUCAAACCGUUGGUCGUAAAACCCGGCAUAACCUAAUCCCAAGGUUGAAGUGUUUGUCUUUGCACCCCACGCCUCAACGCAUAUAGCGGUCGGAGCCUUACUACUCUCUCGACCUCCAUAACACGCUGCACACUAAGUCCUUGGGCUAUGUGCAAUCCUAGCCGCUCUAUUGUCACUCACGACUAUAGAGUAACACUGUUCCGCUCCACACAAAUCUCCUAACUCACUAGUCGUUGUGCUGCUUGACUGUAGCAUCGACUAGACAAGCCAUUUAAGGCGUUAUGCUACCCAACCUCAGCAUCGGCUAACCAAACCCAAAUUUCUAGCCGUCGUGCUGCCCAACUAUAGCACCGACUAGAAACCAAAUCCACCAAAUAAACCCCACCUAUCCAAAUUAUCCUUUCUUCGAUUUUAUUUAAUUCCCAACCUUUAGAAACCAAAACCUCUCUUUUGUUUUCCAAAUUUAAAUCUAUUUUGAACCAUUCCUUUUUCCCUCGCUUUGCUCCAAUUUUAUUUAUUCCUUGGUUUAUCAUUUCUUUGUAGCAUUUUUUUAUAGGGUUUAUUUGCUAUCUUUUUGUAUUAGUACGUUCGACCGUACAGCAAAUUCUAUCGACAUCCAAGGAGCUUAUGUGGACCCAGAUGGCUACGCUAAAACCACAAGAAUCUCGAGGCGUGAGGCAAGACAUAACUAAAAUUUUGAUCAUAUAGAAAACUCAAUAUAAUCUUCAGUUUAAUUUUAUGCAUGAUAUAUUACUCAUUUAGCAUCUCAUCGGUAGAUGUUAAAUGCCUUCAAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.63%
ME_num:
MEP:
6.5%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.93
Avg Expression:
15.45
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 7.54714692158181 | 7.29125347073312e-69 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 7.10594882729043 | 1.1613431383296e-59 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 7.00387983943874 | 1.85027394304151e-59 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.21298841196016 | 7.11807498013218e-46 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.54970450448739 | 7.09567474414276e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.61376195053594 | 0.0279153563108196 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.54025798648863 | 5.11852774447994e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.73702574886873 | 1.88696417282811e-22 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.42358495144617 | 9.23115474271762e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 7.32484901197448 | 1.71761116491698e-63 |