RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0589

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

26816586

End:

26817006

Strand:

-

Ref_name:

OSA-LNCN0589

Sequence
(OSA-LNCN0589.1):

ACAAUAACCACCCAUAGUUACUGGACUCUUCUGAAAUCUGAAGCCUCAAGAGUUCUGUAGAACUUCUGGGGCUGGUGAGUAUUUGCAGCUGAACAGCAGCAGCAAUGUAUAACUGGCGGCGGCGGAUAGUACAGUUAAGAACUAUAGGCCGUUUUGGAUUAAAGCUAAAACGGUGCCCUACCAAAAUUUUGGUAAUUUAAAUAGUAAAUAUGUUAGUUUGGUUUGAAGCCAAACAAUUGAUAAGGCCGAUACUCAAUUUGGCCAUAUUCUUCAUCAUAGUACUAAAAUUUGGCUCCAUAUUGGUAUCAAACUAAAAGUAGGCUAAUUAACUUUACCCUACCAAAAAAUUGGUAGGGUAGAGAAUCAAAUAGGCCCAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

374

LEP:

76.02%

ME_num:

116

MEP:

23.58%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.88

Avg Expression:

1.77

Tip: OSA-LNCN0589 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.545618137009190.00397822583032832