Chr:
Chr1
Start:
26528024
End:
26528552
Strand:
-
Ref_name:
OSA-LNCN0582
Sequence
(OSA-LNCN0582.1):
ACUGGAACCAAAGACCAGCAUUCAUUAGGAAAUCAAAUAUGAAGCAGGUGAAAUACAGAACCCUCCAAGCAAGGUAUAAUAUUAUAUGCUCAUAAGUGAAAAUGAUCACCAAUAUUAUGGAAGGCUGCUUAUACAAAAGAUAUGCGGGCAGCCUCAUUAUCUUGAUUAGAAGGUGAAAUACAAUCCACUCCAAUAUAUGAUGCCAAUUUUACCAAAUUAUUAUAGAACAAUUUCAUUACCACAGUAGCAACAAUGACUUGGAUAGCAUGAGAUCGUGGAGCAAUUCAGCACCAGAAAACAGGUCAGUUCUUUAGUUCAGGUGUUUCUGGUAUUAUUUUCGUGCAUACAACAUACCAAUAACUGAACGAAGCUCUGCACCGAAAUAUUUAACAUAGCAUAACACAUUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.72%
ME_num:
MEP:
36.18%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.85
Avg Expression:
4.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.2263244202295 | 5.26365294818573e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.67488598725456 | 0.00302330467844937 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.16325820787833 | 2.57903389303351e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.49990643248233 | 0.027435086040782 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.69977891988102 | 0.00579196241120156 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.53627416037997 | 0.00530713501635941 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.50493728872931 | 0.0032991881156243 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.489037955254 | 0.0196601980697348 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.6366878269871 | 0.0146356524285013 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.86461689339061 | 0.000377542416420466 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.9250951678017 | 0.00015945601415638 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.59241795029106 | 0.00724784234381418 |