Chr:
Chr1
Start:
26384373
End:
26385088
Strand:
+
Ref_name:
OSA-LNCN0577
Sequence
(OSA-LNCN0577.1):
GUCAAGAUGUAAAACUAUACAAACUGACCACGAAUAAGUACACCGGAUGUCCCUCAACUUAACAGCGAGAUUUUUUAAGAUCGCUUAACCACAAGGCUAAUGUAUACCUCUAAACUUACAUAAACCGUGUAAUCAAGUCCUAUAAUAGUAUAUAUAGAUGGUUUUGUUGAUGUGGCAUCCCAGUCAACAAUAUGAGACUACAUGUAAAUGAGAAUGUGAGAUGAAUAAAAAUGUAGGUAUGCAUCCUUUUUCUUCUCUUUUCUUUCUUCUCUUUUCGUUGGCGCAGAGCAUGGUGUGGAUCCGGGCGGUCGGCAAAAAAGGCGGCGACCGGGCAUGGAGGCCGUGGAGCGGGGCCGUGACGGAUUGAGUGGUGUGGUGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.83%
ME_num:
MEP:
31.3%
HE_num:
HEP:
41.67%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.85
Avg Expression:
27.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.32044228251176 | 0.000443380537014932 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.63071537145615 | 0.0307938256759259 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 6.08955758302222 | 2.76870404466342e-05 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.66968780855152 | 0.0455716695289368 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.56387237279433 | 1.92292440151977e-05 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.62516917314153 | 9.18187173486357e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.71924840320029 | 0.00117493990057838 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.00478623252353 | 2.10662028015856e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.48902271002319 | 5.28822877572286e-07 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 2.95416095344571 | 0.000683841605591113 |
| 11 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.92949384122305 | 0.0206578075025446 |
| 12 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.92941185863235 | 0.0208978719248071 |
| 13 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.92937553222054 | 0.0207197715866899 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.43951352916959 | 0.00557909396872994 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.38086942234218 | 0.00219456887282623 |