Chr:
Chr1
Start:
26309487
End:
26311239
Strand:
+
Ref_name:
OSA-LNCN0575
Sequence
(OSA-LNCN0575.1):
GGGGUAGAGCCGUAGAGGUCAAGCGAACAUGGAAUUCAGCGGUGUCCGGUUCGGACGCGUCUGGCUCAUACGCAAUUAUGCAUCCAAAUUCCAAGGUAAGCUGUAGGCACUUGGGCUGAAACACUUAUUUCGGUCCCUAUUGGGCUGGGAAGAUUUUAAUAGGAAUAAGUCCAUUUUGACUCCCUUAAAAAUGACCCGAAUCUAAUUCGUGACCCUCAACCGUAAAACCAGGUAAGAUGACUUCUGAACUAUUCAAACCAGUGCAAUUUGACUCCCUAAGCAAUUUUAGAGGGCGGUUUUGCUGAUGUGGCGCUGACAUGGUGCUGUUGACCUGGUCUUUGUCCACGUGGCGCUUAUGUGGCAUUAGAAUUAAAAAAAAUAUUUAUAGGACCCAUCUAUCAUUCAUAAAAAAAUAUUGUGGGGGCCCACAUGUCAUCAUCUAUCUUUCUCUUCUUCCUUCUCCCUGAGAUUUCUCUGCCUUCUCUCUCUCCCCAUUUCUCUUCACUUUCUCUCGACGCAGUGGGCGGAUAGGGGCACCGUCACGCCGGGGAGGGCGAGGGCUUCAUGGAUCCCCGUGGCGGCGGCGGCGGGGGCGUGGGACAUCGAUGUCGAUGGUGGAGGCAUCGAGCGGGUUGAGCGGUGGCUCCGGCGGCGUGCGGCGACCCCGUUGGCGCUGGAGGAGGGGCGCCGGCAUGUCGAUCUGUCUGGAGCUGGUCGCUUGGAGGGGCGUCGGCGGCGUGCACCGCCAAGGUCGAGGGCGGCGGCGUCAUGGACCCCGGCGACAGCGGCGUCAUGGCCUCUCCUGUCCUCACGCCUCUUCUUCCUCCUCCUUCCUUCUCUCAUUCUUUCCCCCUCUCCUUUCUACCACUGUGGCGACGGCGGCGGUAGCAGCGAGAGGCUGUUGGGAGGAAGAAUGGAGGGGGGGGCGUAUGGGCCGCUCGACUACCUCACGAUGGAGGCCGCUCCCGUGGAAGCCACUCGACGCUGCUGCGAUGGAAGCCGCCGCUCGACUGCGCUGCCGCCCUAUUGUCGCUUGCCCGCCGCCUCCGGUCCAGCUCCUGCCCCCUGCAAACCAGCAAAGGGGAGAGAAAGAGAAAGAAAGAGGAUGACAUGUUAGUGGGUCCCACAAUAUGUGUGAAUGGCAAAUUGGGCCCACAUGUUUUUUUUAAUUCUAAUGCCACGUAUGCGCCACGUGGGACGAAGAACAGAUCAAUAUCGCCAUGUCAGCAAAACCACCCUCCAAAACCGCUGAGAGAGUUAAAUUACACUGGUUUUAAUAGUUCGAGGAGUCAUCUUAUACGGUUUUGUGGUUGAGGGUCAGAUUAUAUUCGGGUCAUAUUUAAGGGAGUCAAAGUGGACUUAUUCCAUUUUAAUACUAGGCCAUAGCUCAUGGUCAGUCACAGGCCUGAAAAAUGAGUUUCAUAACUAGGCUGGGCCUGUUUCCAGGCCUAACAGUAUACCCAUUUGAAGCCCAGCUCAUCUAUUCCUCGGUGUUAUUCUUUCUGAUCUUCCUUAACCAAUACACACACAUCGACACGCUGUGUUAUAUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.37%
ME_num:
MEP:
23.98%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
2.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -3.86181964180324 | 0.00377994530648567 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -3.04300437077737 | 0.0283379379595708 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.61706695366642 | 1.5453412861608e-09 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.39720930275779 | 6.36913201408111e-08 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.35097695418038 | 0.000384822299390503 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.4792937469222 | 7.20333854120163e-05 |