Chr:
Chr1
Start:
25866941
End:
25867400
Strand:
-
Ref_name:
OSA-LNCN0566
Sequence
(OSA-LNCN0566.1):
AUGGAAUCAUAUAUACGGAGGGCCUGUUUGGUACAGCUCCAACUCCUAAAUUUAACUCCAGGAGUUGAGUCUGGAGUGGAGUUGUGGAAGAACUCUACCCAGCUCCAUUCCCAGUUCUGGUGGAGCUGAAACUGUUUGACUGAGCUCUAGCUCAGUUCUAGUGGAGCUGAAACUGUUUGACUCCAGGAGGGGUGGAGCUGGAGCUGUGCCAAACAGGCCCAGAGUAUAUAAGCCAGGGUCUGACAGAUCAGAACCCCGACCCUGUAUACGCUGCUGGCAAAGCCAAACGCCCCCACACAUGAUAAGCUUGUCUACCAAAUUUUAUAAUUGGCAUAAGGGAGAAAUUAAAUUAUCACUUUGCACGGGUUGCUUACUGUAGUAACUUCUUUUAGAUGCAUGCAUAUAGGACUGGUUUGGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.06%
ME_num:
MEP:
31.3%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.85
Avg Expression:
3.70
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.05303816360734 | 0.0144965519267002 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.74443898141171 | 0.0305580128301313 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.34228508511523 | 0.0101959625482881 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.61549556476074 | 0.00179930760728329 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.10730303966037 | 0.0063899042505577 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.12759140681161 | 0.0113412897076422 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 3.34196015287018 | 0.0170840728630037 |
| 8 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 5.43912684653537 | 0.000526438550310613 |
| 9 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 6.58024439599461 | 0.000250190063014928 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.89648577839304 | 0.000180635095170506 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.81823730883515 | 0.0139348037150667 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.18639906186443 | 0.00272573892295944 |