Chr:
Chr1
Start:
25800652
End:
25801270
Strand:
+
Ref_name:
OSA-LNCN0564
Sequence
(OSA-LNCN0564.2):
GAAGCGGAUGUCACAACUGUACCAUCUUAUUUGUAAUAUUCAUCACAUGGGCUGCACACACCGUCAAGACCAGCUUGACUAAGGUUGCUGCUACAUGAUCAAGACAUCACGGGGUGACGAGAGGAAGGGACAGACGGGAUUCAUAAUCCCAUAGCAUAGCGUAAGAUGGAGACCCUCGUACUAUCUCCAUCUCUCCUGUUGCCACUAUCAGUUUUUGGCUGCCGCCGGCUUGCUGCUCUUCACUUCUUCUUGGGCUCCCGGGGCUUCUGCUCAGCCUUCUUGACGCCGCCCUUGGCGGCCGCGGGCUUCGUCGCCGUCUCACUGAGCUUGGCAGCCGGCUCCUUGGCAAGUCCGGCAGGUUUCACGGCCUUCAGAGAAGCCAUUCUUCUGAUGCUUCUCUGCUCUGUUCUGUCCUGACCCUGGGAUAAGGCUCAGAAGCUCUUAAGCAGCUGUGUUGUUGAUGAUGAACUGGAAACGGAUGGCAACAAG
Sequence
(OSA-LNCN0564.1):
UGAAAAAAUAUGAAGCGGAUGUCACAACUGUACCAUCUUAUUUGUAAUAUUCAUCACAUGGGCUGCACACACCGUCAAGACCAGCUUGACUAAGGUUGCUGCUACAUGAUCAAGACAUCACGGGGUGACGAGAGGAAGGGACAGACGGGAUUCAUAAUCCCAUAGCAUAGCGUAAGAUGGAGACCCUCGUACUAUCUCCAUCUCUCCUGUUGCCACUAUCAGUUUUUGGCUGCCGCCGGCUUGCUGCUCUUCACCUCUUCUUGGGCUCCCGGGGCUUCUGCUCAGCCUUCUUGACGCCGCCCUUGGCGGCCGCGGGCUUCGUCGCCGUCUCACUGAGCUUGGCAGCCGGCUCCUUGGCAAGUCCGGCAGGUUUCACGGCCUUCAGAGAAGCCAUUCUUCUGAUGCUUCUCUGCUCUGUUCUGUCCUGACCCUGGGAUAAGGCUCAGAAGCUCUUAAGCAGCUGUGUUGUUGAUGAUGAACUGGAAACGGAUGGCAACAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.58%
ME_num:
MEP:
13.62%
HE_num:
HEP:
62.6%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.93
Avg Expression:
2346.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -6.8448464525433 | 1.1430693505138e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -6.13247365492173 | 1.20320511527687e-24 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.50798995195876 | 2.51087334346765e-24 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -7.12101909100607 | 7.10281432234205e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -8.23599271358646 | 2.6360732338259e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -7.50977316710884 | 3.09406599632775e-12 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.02384693566029 | 4.43710443684848e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -6.03400139801345 | 1.22855506035027e-29 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.20141140192351 | 0.0140469291386278 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.71699559367203 | 1.542276647063e-12 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -7.98123384095538 | 6.9125510872875e-15 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.79510760495873 | 8.41113590740627e-27 |
| 13 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.01454495891578 | 0.00931806599779836 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.22919704153183 | 7.78039515163503e-22 |
| 15 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.35637158940454 | 0.00293210536167189 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.06295255662509 | 5.89885492277532e-36 |