Chr:
Chr1
Start:
25391542
End:
25395080
Strand:
+
Ref_name:
OSA-LNCN0555
Sequence
(OSA-LNCN0555.1):
CAAUAAUCUCUAUAAUCUCUAUAGGUGAAUAUUGAAUUCAAAAAUAGCAGGACCAUCCGAUGGAGAAAAAUAGUAAAGCUUGGUUUUUCUGGAGCUUUUCAACGCCUGCCUCACAUGUGUGAGAGAGCAAAGAAAAUUUAAAAAAUGCAUAGGGAAUAGAACUAGCAAUAGAACUAUCGAAAUAGAAGGCUUUCCAAGCAAUCCAUAGUCCCACACGGCACAUAACUGUAGAAAUGUUUGCAAAGUUCAGAAAACAAAAGGCAAAACCGCCACCUAAUUUUGGUAUAUUCUAAAAAUUAGUCCAUAAAAAUAGUGUGUAUUGUACAUUUUGUCCCAAGAUUAAAUUAGCAUUGGGUACAACAAUUAAUUCUAUAAGUUAGGCCACUUGACUGUGCAUGAAAAAGAUCUAAAGUUUGGACAAUUUUCAUAAUAAUACGUAGAGCUUUUGGUUUAAUUCAGAGAAAGGUUUCCAUAACUACAAUGAUUAAAAAUAAUUCGUGCACUUAAUAUAAUACAUAUGUUCCACAGGGCGGGCAUGCGGGAGCGCCAGUCCCACGCUCCCAACGGCGGGAGCGUAUCGGUCCUGCACGACCAGCUCGGUCCCGCAUCACCAAACAACGGACCGCAUCAGUCCCGCUUCUCCAACCCGCGCGACCUUGUGGGUCCCGUGCAAUUCACCAAAUCAGUGGUUGAUUUAGCAGCGAUUUGCUUCUAGUGGUUGAAUAUGAUUUUCGUAAAUAAUUUGUAGCUGAGAGCAAAGCCCUCAAAAUAAUUUUAAGAAACCAUUCUAACGACCAACUUAAGGGGUUCCUAUAGUCGGUAUUAGCUCUGAUACCAUGCCUGUGGAGGGCACCCGAACUUUACAUUAUAUCUGCCAAUUGAAGUGAACAAUUCAAAUCAAAUAGCAAGCAUAAUGUAAAAUCCGAAGCCUCGAGUAAAGGAUAUUGGGACAUUGCUGGGACUUUAGCUUGCCAGUCAACUUCAGCCUGAGAUGUGCCCGUCAAACCACAUGAAAGUGGUGACCAAAUGUGUUACACAUUCAGGAGACUUGACAAAAAAAUAGCCAAAGCUCUACUACAUCCCAAAUAUCCUAAACCCUUACUCAUGUGAAACUAGUUCCCAUGAUGUGAACUAGCUUCACACUUUCAUCUUAAGCAACGAUACAGAGAAGAAAAAAUACAAGACAAAUAAAUUUCAAUUACAACUACUUUAGUUAUACAUAGGCCGACCAGCUAAAUAAUCAAAGAUUCGCGGAAGCUUGGCUACCCGAAUCACAAGCAAACCGACUAAGGGUUGAUCUAGUUAGAAUCCAAUUCCUAGAAGAAGCGGUCGAACCCACAUCACUCAAGAAAUAUUAAGCAUACAACCUACAAAACCUACAAAUUCUAGUAUAUAACAAGAGUCAAUACAUCAUUAGAAAAAAAUAUACUGCCAAGACAAAAGCAAUUCUGACAUACUACAUGCAGGGCAUAUAUUCAAGGAAGGCUAUAUGUAGUUAAAUUUUAGCGUAAGCAAGGUUUGGUUGACAAUUCUUUCCAAAGGAGUUGAUCAUUCAAUUAACAAAACAAGUUUUGUAAUUAUAUCAUAAAAAGAGCAUCAUAGUACCAUUAUAAGCAUACCCUUGCUGCCUUCCUUCGCAAAAAGGCAUAAUAUCAUCGUCACAUGCACACACACACUUAACACAACACAUUUCAAGGGAGAAAACUAGAAAUGUUUGAUACAAGGAAACUAUGAUUUUCAUAAAGGCUUAGAUGGGCAACAAAAUGCAUGGAUGAGAAUGAAGCGUCAACGAAGAAACCAAUAAAUCGUUAGGGACAAGAAAACUAAGAUUUUCAUAAAAUCAAUAAGAUGCAACCAAAUGUAGACGUUUAGCCCGCAACCAAGAUAUAUUCUUUUCGAUAAACAAGAUAUUUUUUUCGAUAAACAGGGUAACAUAACUAUAGAAAUUAAAUUUGUUAUCAGUCUACUAUUAAAACAUCAUAGCACAAAAAAACCGCAAGGUUUAAAUGCAAGCAAAUAUUUUCUUUUCACAAACUAGUAAGCAUAAGUUCAUACAAAAUUUAGGAAAUUAAGAUUUCAGAACUAAAAUAAAGCUUUAAAGUCCAAAGAGAGGUUCCAAAAAGAGAAUUUGUAAUUGAAGAAAUCAAACUUAAAGUACCAAGUUGAAACUUAAUGAUGAAAAAAAAAAGUUACGUGAGAAAGAAAAAUAAAGAUUUAGUAUCCAAAUAGCAUAACAUUCGAAAAUAAAGUAAUCCAACUAAAAGCAUAAAGUUUAAAUGAGAAGAGGAAAUUAAGCAUCAAGGGAGAAACCUAGAAACGUUUGAUACAAGGAAACCGCGAUUUUCAUAAAAGCUUAAAGGUGUAAAGAAAAGAUCGAAAAAGAGAAACUUUGCAACCAAAGAAAUCAGACUGAAAGUACCAAGUUGAAACUCAAUGAUAAAAAAGAAACCGUCCCGCGAAAAACAAAAGUAAAGGUUGAAAGUCCAAAUAGCAUGUCAAAAGCAUGAAUACAAGAGAACGUUCAAAAAUUAAGAAUUCCAAUUGAAAGCAUAAAGUUUAACCGAGACAAUGGAAAAUGAAGCGUCAAGGGAGAAACCUAGAAAAGUGCGAUAAAAGGAAACCGCGAAUUGCAUAAAAAACUUCAAGGUGCAACAAAAUACAAGGGUCCAGCUCACAACAAAGUUAUUUGUUUUCAAUAAACAGGGAGACCCAACUCUGCAACUCAAUUGCAUAAAAAACUUCAAGGUGCAACAAAAUACAAGGGUCCAGCUCACAACAAAGUUAUUUGUUUUCAAUAAACAGGGAGACCCAACUCUGCAACUCAAUUGCUAACGGUGACAAGCGAAAAAAUUGGAAACUCCAAAAAGGAUAUUUGAAGAAUCGAUACAAGAAGAACGUGACAAAAUCAAGGAAUCCAAACUAAAAGUACAAAAUUUAACUUAUGAAUGACAAAUGAAGCGUCAAUGGAGAAACCAAUAAAACGUUCGGAACAAACAAACUAUGAUUUUCAUAAAAUCAGUAAGAUGCAACCAAAUGUAGACGUCUAGCCCGCAAUCAAGAUAGUUUUUUCGAUAAACAGGGAAACAUUACUCUAGAAAUUUAAGUAGUUAUAAGUCUACUAUUAAAACAUCAGAGCACAAAAAAUCCGCAAGGUUUAAAUGCAAGCAACUAUUUUUUUUCACAAACUAGUAAGCAAAACUUCAUACAAAAUUUAGUAAAUUGAGAUUUCAGAACUAAAUUCAAGCUUUAUAGUCCAAAGAGAAGAUCGAAAAAAAGAAACUUUGUAAUUGAAGAAAUCAAACUUAAAGUACCAACUUGAAACUCAAUGAUGAAAAAACAACGUCAUGCGAAAAAACAAAGUAAGGUUUAAAGUCCUAAUAGCAUAUCAAAUAGGAGAUGUUUUUUCCGGUACUUUGGUACGUCAUUCGUGUUUGAAUCAGUUUUAAUUUUAUGUUUCAGUUUUAAUCUCUAUCUUACUCCUUAAAAAGAACCAGCAAUUUUUUGUU
Sequence
(OSA-LNCN0555.2):
CCAAGUUGAAACUUAAUGAUGAAAAAAAAAAGUUACGUGAGAAAGAAAAAUAAAGAUUUAGUAUCCAAAUAGCAUAACAUUCGAAAAUAAAGUAAUCCAACUAAAAGCAUAAAGUUUAAAUGAGAAGAGGAAAUUAAGCAUCAAGGGAGAAACCUAGAAACGUUUGAUACAAGGAAACCGCGAUUUUCAUAAAAGCUUAAAGGUGUAAAGAAAAGAUCGAAAAAGAGAAACUUUGCAACCAAAGAAAUCAGACUGAAAGUACCAAGUUGAAACUCAAUGAUAAAAAAGAAACCGUCCCGCGAAAAACAAAAGUAAAGGUUGAAAGUCCAAAUAGCAUGUCAAAAGCAUGAAUACAAGAGAACGUUCAAAAAUUAAGAAUUCCAAUUGAAAGCAUAAAGUUUAACCGAGACAAUGGAAAAUGAAGCGUCAAGGGAGAAACCUAGAAAAGUGCGAUAAAAGGAAACCGCGAAUUGCAUAAAAAACUUCAAGGUGCAACAAAAUACAAGGGUCCAGCUCACAACAAAGUUAUUUGUUUUCAAUAAACAGGGAGACCCAACUCUGCAACUCAAUUGCUAACGGUGACAAGCGAAAAAAUUGGAAACUCCAAAAAGGAUAUUUGAAGAAUCGAUACAAGAAGAACGUGACAAAAUCAAGGAAUCCAAACUAAAAGUACAAAAUUUAACUUAUGAAUGACAAAUGAAGCGUCAAUGGAGAAACCAAUAAAACGUUCGGAACAAACAAACUAUGAUUUUCAUAAAAUCAGUAAGAUGCAACCAAAUGUAGACGUCUAGCCCGCAAUCAAGAUAGUUUUUUCGAUAAACAGGGAAACAUUACUCUAGAAAUUUAAGUAGUUAUAAGUCUACUAUUAAAACAUCAGAGCACAAAAAAUCCGCAAGGUUUAAAUGCAAGCAACUAUUUUUUUUCACAAACUAGUAAGCAAAACUUCAUACAAAAUUUAGUAAAUUGAGAUUUCAGAACUAAAUUCAAGCUUUAUAGUCCAAAGAGAAGAUCGAAAAAAAGAAACUUUGUAAUUGAAGAAAUCAAACUUAAAGUACCAACUUGAAACUCAAUGAUGAAAAAACAACGUCAUGCGAAAAAACAAAGUAAGGUUUAAAGUCCUAAUAGCAUAUCAAAUAGGAGAUGUUUUUUCCGGUACUUUGGUACGUCAUUCGUGUUUGAAUCAGUUUUAAUUUUAUGUUUCAGUUUUAAUCUCUAUCUUACUCCUUAAAAAGAACCAGCAAUUUUUUGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.64%
ME_num:
MEP:
21.75%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.82
Avg Expression:
2.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.62798116501688 | 0.00110222454333535 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.29295400216272 | 0.0185673634937217 |