RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN0547

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

25330841

End:

25338403

Strand:

+

Ref_name:

OSA-LNCN0547

Sequence
(OSA-LNCN0547.2):

AACGGACGGCAACCCCGCCUCUCCCUCCCGCACCUCCCUCUCUCCGCCUCGACCGCAUCCGUGCGAUCCGCUUCUGUCGCACCUCCCCCUUCUGGCCGCUAUCGAAUCCGUCCCCCUCCCGUCGCCGCCCAGUCUCCCCUCCCACCGCCGCCUCCCUCCCGUCGCCGACCCAAUCCGCCGUCUUGCCGCCCAGCUCCGGCUCCGGUCUCCCCACUCUCUUUCUCAAACCCGUCGCCUGUUGAUCCCCGUCCUCCGCCGCAACCUACGCCCUCCUCCGCGCAGACACCGAUCUCCGUCGCCAGUUCAACGUCGGGCGCAUCCAUCCACGACCACGACCACGACCACGCCGCCCGCCGAUCCGGACAUCGCUGCUGUCCCUCCGCCGGCGAAGUCUGUGCGGCCUCCGCCUCAACCGGCAUCGCCGCCGCUGUCCCUCCACCGCGGAAAUCGUCACGCCUCGCCUCAACCGCCACCUAUACGGAGUCACGCCGCCGUCCCUCCGCCGCUGAAAGGUCAUUGCGCUUGAAAUUAAUUGGCUUCACCGGACAACACCAGCGACGCCUAGCGGAUCUCCACGCCUGCUGCCCACCGGCACUGCCCACUGAGGAGGAGUUCUACAGUGAUGCUGAAGGUGUAGAGGGUUAGGCGUAGCCCUGGUCAAGCUGCUUGUGGGAUGGAGUCGCCUGAGCUUUUUAUUUUAUUUUCCGCUGCUUAGAUCUUUAUUGUUUGAGAGGAACUAUCUACCUCUGUAAUGACUUUAUAUUCGCUUAUUAAUUAGAGUAAUAAUUGCACUCUAUUAUCAAUUUGUUAUUGUGUGCCCCGGCUGAUUCCUGGACGAGGGUUUACAUACAUAAGCGUUUGGAAUUUUGGAUAGAAAUUCCGGGCGUGACAACUACUUGUGUGAGUUCAACUGCACUGAGUUGGAUACAAUUAGGCUACUAAUUCCCAGAAUUAUAUCAAGUUGUUGUUGAUUAAAUGAUCCAUCUAGGUAAUAAAAAUAUUAUGGUCGCUUCGAUUGAGCAUAUCACUUUUCAUCAAAUAGUCCGUUGUUUGGAUCGCAAGAAGCAUCUGUUCAGCGAGCCAACAUUAGUGGUUCUGGUAUAAAAAAAAUUGUAUGUAUUAGUUCACUUAAAAAUGAUGGGAGCCAUUAUGGUUACUGCUCUAAUGUUUUUUCCUCGUAUGACAUGCAUAGUUUUUUUUACAUGGUUGUUUCCUAAUGUUUUUUUUUUUUCACAAUAUAGUUUCCAACUGCACGCCUAAGCCCUAAUGCAAGAAAGUGUCUCGCUCAAAAGUUGGUUGUAGAUGGCACUCCUUAAAGGAAGACAUAAGAACAUCCAGAGCUGUUUUUUUUGUCUGAUGUGUUAUAUUGAGUGAUGAUUACACUCAUGAGACAUAUUGUGUGAGUUUUGGUGUUCUGAAUGCUUUUAUAAGGAAAAUAAAAAGAAAAUACUCUCGGUAGACUAUCCAGAUAAUGUUUUAAUCUCCAUUUUCCUAUAAGCAAAUGCAGAACUUGAAAUGCAAGCAACUGUGUUUAAGUUAAUGACAUUGAGUGAUGGUUAUAUAUGAGCUUGUCAGAAGUUAUUUCUGAACUUAUCUGAACUUUGGUUGUUUCCUCAUAUGACUGAAUUCUUUUUAAUGAUCUUUUAUUAUUCUGUAUAUAAUGUUUGUGAUUACGACUCAUACGGAGUGCUAAAUGUUUUCCACAUGUGCAG

Sequence
(OSA-LNCN0547.1):

AACGGACGGCAACCCCGCCUCUCCCUCCCGCACCUCCCUCUCUCCGCCUCGACCGCAUCCGUGCGAUCCGCUUCUGUCGCACCUCCCCCUUCUGGCCGCUAUCGAAUCCGUCCCCCUCCCGUCGCCGCCCAGUCUCCCCUCCCACCGCCGCCUCCCUCCCGUCGCCGACCCAAUCCGCCGUCUUGCCGCCCAGCUCCGGCUCCGGUCUCCCCACUCUCUUUCUCAAACCCGUCGCCUGUUGAUCCCCGUCCUCCGCCGCAACCUACGCCCUCCUCCGCGCAGACACCGAUCUCCGUCGCCAGUUCAACGUCGGGCGCAUCCAUCCACGACCACGACCACGACCACGCCGCCCGCCGAUCCGGACAUCGCUGCUGUCCCUCCGCCGGCGAAGUCUGUGCGGCCUCCGCCUCAACCGGCAUCGCCGCCGCUGUCCCUCCACCGCGGAAAUCGUCACGCCUCGCCUCAACCGCCACCUAUACGGAGUCACGCCGCCGUCCCUCCGCCGCUGAAAGGUCAUUGCGCUUGAAAUUAAUUGGCUUCACCGGUUAGUACUGUUUUCUACCUACACAUAGUGGCACACAGUUGCUUGCUGCCAGGUAAGGACUAAUAGGUGAUUUUCAACUGAACAAUUGAUCUAGAAAUAUUGGAGGAUUCUCACUGUAACACUGCUAAUUAUAACACUUGUGCUCUGAGUGUUAUUGCCUCUUUUCAUUCAGUGGUUAUGGCUGCUUAUUAUAAUCUGAGUGAAAUUUCUGUAGAUGAUGUACCCCAUUUCCUGCAGUUAUAAUUAGUACGUCUAAUGCAGUAUGCAGCUAUAAUCAAGAACUUAACAGUGCAUGUAGACCAUCUGAUGUAGUACUUCCUUUCCAGCAUAAGUAAAAGGCUUACAUUUAUACUCUGCAAAAAAUGUAAGCCUUUUAUCCUGGCAAGCAUGGUUUGUGAAUUAAGGUCAGGAAGGAGCUGGAAAUCAUAUGCACCUAGCUGAUUUUGUUACUGUCAGGUGUCAACUGUGUUUGGGUAACAAAUUAAUUUGUUUUUCGACUCGUGCAUUGCAGCCUGGCAUACCAUGCUAAUUUCUUCUGGAAUCACUAUGAACAGUUCACGUCUGGAUAACUCUUUAUACCAUUUAUAGCAGUUAUGGCAUUAGAGUUGAGGUACUUCCUCCGUUUCAUAUUAUAAGACUUUCUAGCAUUACCCAUAUUCAUAUAUAUGUUAAUGAAUCUAGACAUAUAUGUGUUCCUAGAUUCAUUAACAUCUAUAUGAAUAUGGGCAAUACUAGAAAGUCUUACAACUUGAAACGGAGGUAGUAGAUCUCAGGUUCUCUGAUUAAUUUCAAAUACUAUUCAUAAACCAAUAGUAUAUAUUGUACUGAUAGGUAAAAUGAAAAUUCAGAAGGAUAUACUUACAAUGAGUAGACAACUGUGAAUUUGGACUCACGUCCAUGAGGAGACUGUAAAAUCAUUUUCCUUGUAGGUCAGUUGACGUAUUUUGCCUAUAGAGCUAGUCCUGUUCUGAAUUCUUUCAUAUCAAUAUGCAUAGAUCCAAAACUAACUGCAGUAUAUCCAAAACUAACUAGCAAAAUAGUCAUUUUAAAUGGAUGUUCCUGAUAUAUGCACUUACUGAUUCCCCUUAAUCAUUACUUGUGAGAGGUGUUUAAUUUGUUUAAUGUGAAAGUAGAUUUAUUUCCCAUGUGAACUACUAGCUUUGACUGUAUCAAUGAUAAAUUGUAGUUUACUGUUAAUCUUUGAGUCAUUCAUGUGCAUGUAGUGCCAGCUUAAGAUUAUUAUUUAUGUGUUAAGCAUAUACCUGUAAAACAUUAUGUUUGUCAUUAGAUCCUACACUAACUGCCGGUAGCAUAAAUCCAGUUAUAUGGUCAAAUGACUGGAUAGCAGCCUGAAACUCUCUGGUAUCCCUGAACAUACUUUAUGUGAACAACCUUAAAUGGAACGACAUGCAGCAUACAAGAACACUGCCAGUUACUGCUAUGAUCCUAUAAUGACAGCUAAAUUCUUUUGUUUUGUUUUUCCCUCAUUCUGUGAUGUCAAAUAGAAAUAUUGUAUAUGUCAAUUUGGAUGUACAUAGUGACACAUCUGUUUGUUGACCCAUCACCAUCAGCUCUGUUUUCAUAUACAUAACCAAAUUAGUAUAGGAAGAUUAGGGGAUCAAAAGCUGCAAUUUCUAAGUUGAAUCUAACAUAUAUUUCAUUUCUGGCAACAUAUAAGUUUGAUCUAAAUAUGACAGAAUUUGUUUUCGACUUCAAAAUAUAAUUUAUCCUCAUCAUAUUUUAUAUGUGCAGUGACCCAAGUGUACUUUCUUCUUGAUUUGCUUAUAUAAAUUUUCCUUUAGAAAAUGCUUAUAUAAUUUUCCUAUAGGACAACACCAGCGACGCCUAGCGGAUCUCCACGCCUGCUGCCCACCGGCACUGCCCACUGAACAAGUGUAAUUAGCCGUUGGAGUGCUUCUUGAAGUAGACAGAAAGCAUAAUGGAUAAAAUGGGUGAGACAUUAUUUGUUUUUCUCAACUUUGAGAGUUGACUGGGAUGUAAUUCUGGAUAACAUAAUCAUCACGUGUGAAUAUUUGAAACGAACUUCAAUUGUCUAUUUCAGACAGCUGUACAUGUCAUUGGUUGUUCAUUCCAAUAAAGUGUGCAUUGUCGAGCGAUUGGUGAUGAUUGUCCCUUAAUUAUGCACUUCACACUAAUAUUAACCAUAUAACAUAUAGUGCCAUAUAACUCCAGAUAUUCAUAGUUGCAUCUGAGCCAAAUGGUGUCUGUCAUAUCUUUGAUUGACCUUGCACACAAUUUCAUAGUCGUGUUAAUGUACUUAGCAAAUUCGCCAUAAUACACGAUUAAAACAGUGCAAUGUAUGGUUAUGGCACUACUAUGCAAGCUAGGAUUAACCACUAAUGUACAAAUUUGGCAAUUAG

Sequence
(OSA-LNCN0547.3):

CGGCAACCCCGCCUCUCCCUCCCGCACCUCCCUCUCUCCGCCUCGACCGCAUCCGUGCGAUCCGCUUCUGUCGCACCUCCCCCUUCUGGCCGCUAUCGAAUCCGUCCCCCUCCCGUCGCCGCCCAGUCUCCCCUCCCACCGCCGCCUCCCUCCCGUCGCCGACCCAAUCCGCCGUCUUGCCGCCCAGCUCCGGCUCCGGUCUCCCCACUCUCUUUCUCAAACCCGUCGCCUGUUGAUCCCCGUCCUCCGCCGCAACCUACGCCCUCCUCCGCGCAGACACCGAUCUCCGUCGCCAGUUCAACGUCGGGCGCAUCCAUCCACGACCACGACCACGACCACGCCGCCCGCCGAUCCGGACAUCGCUGCUGUCCCUCCGCCGGCGAAGUCUGUGCGGCCUCCGCCUCAACCGGCAUCGCCGCCGCUGUCCCUCCACCGCGGAAAUCGUCACGCCUCGCCUCAACCGCCACCUAUACGGAGUCACGCCGCCGUCCCUCCGCCGCUGAAAGGACAACACCAGCGACGCCUAGCGGAUCUCCACGCCUGCUGCCCACCGGCACUGCCCACUGGUAGGUCCUGUCAAGUUCAAUAGGGUGUUUGAUAUUAAAAGCAAGAAGUGCUGAAGCGAUAUGAUCCUAUUGUUCAAUAAUGAUUGCAUAUGUUCAAUUGUUAAUGAGUGAAUUGCACUACUGUCACACCCUAAAAAUCCCAAGUGUAUAAAUUGUUGUUUAAAUGGAAUUAUUAGAAAUGAUUUUAAAAGCCUUGAAGAAAAGAUCUAAUUUUAAAUAAUAAAUUCCAAUAUAAAAGUGGGCCAGAUAAAAUUUUGUUAAAUAAUUCUCUUGAUUCUAUAGUCCCUAGAUUUUUCAGGAAGUAUUUUUAAUAAAUGGAAUUGCAUUUCAUGAAUAAUUUAAAAAGAAAAAGGUUUUAAAAGUCCUCUUUUGGCUUUGGGCUGAAAGUCGGCCCAAGUCUCUCUCUCUCUCCCCGGCCUGCUCGCGUUCGGCCCAAGUCGGCCCGCCAAGCCGAGCCACCCUCUCUCUCUCCUCUCUCCCGCUGACAGGUGGGGCCCACCUGUCAGGGCCGUCUUCAACCUCCCGCCGCAGCCGUGCCCUAGUCGCGCGCAAGCCGCCGCCGCCCCCUUCCAAAAUUCGGUCGCCUCUUUCCCGAUCCGGUCAAAUUGGUAGAGGGGAAAUGAUCCCUUCGAUCCCCUCUAUCUUUUCCCCUAUAGAAACUUCAUCUAAUUUUGUUUGGAAAUCGCCGGAUUUGAUCUCGAUUCGGAUUCGUUUUACCCUCCUAACCCUAAACCUUCCUUCUCGUCGCCGGCCGCCGUGGGCCUAGCCGCCGCCCCCUAGCCCCUAUAAAAGGACCCCCGAGACCUCCUCUUUUCGUCGCCACCUUCGCCUCAGCUCGCCGCCACUCGUAGCGCCCUAGCCACUAGAGCCCGUGUGCCGCGGCCGCCGAAGGAAGUCCGGUCGUGCGCCGUCGCCGCUCCGGUCGUCGUCGUCGCUCGGGAAGGCCGCCGUCGGGUUCGCCAAGUCAUCGCCGUCCUCGUCCCGUCCUCCGUUUCCACCGAAGAUCGCCGGAGCAUCGCCGUCGUCGUCGACCCGAACGCCUACGCCGCUUCGACCUCGCCACCGUCGCCGUCGGUUGCCGUUCGUCGUCGUCCGAGCCAUCGGUGAGUUCGUCGCGUCGCCCUCUACCCGUUGGUGCCCUCCGUUUGCGCCGCCGCGCCGUCGUUCGCCGGUGAGUACGGGGUGCCGAGCCGCCGCCGGUGAUGACGUCAUCGUCAACGUCAGCGCCACGUCAGCCGUAGACCCGUGGUAGAUCAGUUCGAUCUCAGCCGUUCGUUUUGUUUAGAUUAGAUCUCAGCCGUUCGUUCCGUAGACCGUUUCUGUGCACCCGGUCCACCGUGAACCCGAGCCCGCUAAUGCAAUAAAUCCUUUUUCCUUUUCAAAAAUAAUUCUUUAUUGCGUCAUAAUUCAAUUAAAAUCUAAAUAAAUGAUUUAAUCCGAUUUAAUCUUUAAAAAUUCAUAACUAAUUCAUCUUAGCUCGGAUUUAGGUUGUUCAAGUCUCUAAAUUUUUCUAAAAUUGAGAUCUACAUGUUAAAAAUAUCCACAUGUGUUUUUUAUGAUUGUUUAUGUACUGUUUUGGUGAUUUUGCUCUUUUAUGCUUCGAUUCCGACGUUCCCGGAGAGUCCGAAUUUGCAGGAGAAGAUUUUGAAGAGUUCCAAGAGGAGGAGUUCUACAGUGAUGCUGAAGGUGUAGAGGGUUAGGCGUAGCCCUGGUCAAGCUGCUUGUGGGAUGGAGUCGCCUGAGCUUUUUAUUUUAUUUUCCGCUGCUUAGAUCUUUAUUGUUUGAGAGGAACUAUCUACCUCUGUAAUGACUUUAUAUUCGCUUAUUAAUUAGAGUAAUAAUUGCACUCUAUUAUCAAUUUGUUAUUGUGUGCCCCGGCUGAUUCCUGGACGAGGGUUUACAUACAUAAGCGUUUGGAAUUUUGGAUAGAAAUUCCGGGCGUGACAACUACUUGUGUGAGUUCAACUGCACUGAGUUGGAUACAAUUAGGCUACUAAUUCCCAGAAUUAUAUCAAGUUGUUGUUGAUUAAAUGAUCCAUCUAGGUAAUAAAAAUAUUAUGGUCGCUUCGAUUGAGCAUAUCACUUUUCAUCAAAUAGUCCGUUGUUUGGAUCGCAAGAAGCAUCUGUUCAGCGAGCCAACAUUAGUGGUUCUGGUAUAAAAAAAAUUGUAUGUAUUAGUUCACUUAAAAAUGAUGGGAGCCAUUAUGGUUACUGCUCUAAUGUUUUUUCCUCGUAUGACAUGCAUAGUUUUUUUUACAUGGUUGUUUCCUAAUGUUUUUUUUUUUUCACAAUAUAGUUUCCAACUGCACGCCUAAGCCCUAAUGCAAGAAAGUGUCUCGCUCAAAAGUUGGUUGUAGAUGGCACUCCUUAAAGGAAGACAUAAGAACAUCCAGAGCUGUUUUUUUUGUCUGAUGUGUUAUAUUGAGUGAUGAUUACACUCAUGAGACAUAUUGUGUGAGUUUUGGUGUUCUGAAUGCUUUUAUAAGGAAAAUAAAAAGAAAAUACUCUCGGUAGACUAUCCAGAUAAUGUUUUAAUCUCCAUUUUCCUAUAAGCAAAUGCAGAACUUGAAAUGCAAGCAACUGUGUUUAAGUUAAUGACAUUGAGUGAUGGUUAUAUAUGAGCUUGUCAGAAGUUAUUUCUGAACUUAUCUGAACUUUGGUUGUUUCCUCAUAUGACUGAAUUCUUUUUAAUGAUCUUUUAUUAUUCUGUAUAUAAUGUUUGUGAUUACGACUCAUACGGAGUGCUAAAUGUUUUCCACAUGUGCAG

Sequence
(OSA-LNCN0547.4):

GCAACCCCGCCUCUCCCUCCCGCACCUCCCUCUCUCCGCCUCGACCGCAUCCGUGCGAUCCGCUUCUGUCGCACCUCCCCCUUCUGGCCGCUAUCGAAUCCGUCCCCCUCCCGUCGCCGCCCAGUCUCCCCUCCCACCGCCGCCUCCCUCCCGUCGCCGACCCAAUCCGCCGUCUUGCCGCCCAGCUCCGGCUCCGGUCUCCCCACUCUCUUUCUCAAACCCGUCGCCUGUUGAUCCCCGUCCUCCGCCGCAACCUACGCCCUCCUCCGCGCAGACACCGAUCUCCGUCGCCAGUUCAACGUCGGGCGCAUCCAUCCACGACCACGACCACGACCACGCCGCCCGCCGAUCCGGACAUCGCUGCUGUCCCUCCGCCGGCGAAGUCUGUGCGGCCUCCGCCUCAACCGGCAUCGCCGCCGCUGUCCCUCCACCGCGGAAAUCGUCACGCCUCGCCUCAACCGCCACCUAUACGGAGUCACGCCGCCGUCCCUCCGCCGCUGAAAGCCUGGCAUACCAUGCUAAUUUCUUCUGGAAUCACUAUGAACAGUUCACGUCUGGAUAACUCUUUAUACCAUUUAUAGCAGUUAUGGCAUUAGAGUUGAGGACAACACCAGCGACGCCUAGCGGAUCUCCACGCCUGCUGCCCACCGGCACUGCCCACUGAGGAGGAGUUCUACAGUGAUGCUGAAGGUGUAGAGGGUUAGGCGUAGCCCUGGUCAAGCUGCUUGUGGGAUGGAGUCGCCUGAGCUUUUUAUUUUAUUUUCCGCUGCUUAGAUCUUUAUUGUUUGAGAGGAACUAUCUACCUCUGUAAUGACUUUAUAUUCGCUUAUUAAUUAGAGUAAUAAUUGCACUCUAUUAUCAAUUUGUUAUUGUGUGCCCCGGCUGAUUCCUGGACGAGGGUUUACAUACAUAAGCGUUUGGAAUUUUGGAUAGAAAUUCCGGGCGUGACAACUACUUGUGUGAGUUCAACUGCACUGAGUUGGAUACAAUUAGGCUACUAAUUCCCAGAAUUAUAUCAAGUUGUUGUUGAUUAAAUGAUCCAUCUAGGUAAUAAAAAUAUUAUGGUCGCUUCGAUUGAGCAUAUCACUUUUCAUCAAAUAGUCCGUUGUUUGGAUCGCAAGAAGCAUCUGUUCAGCGAGCCAACAUUAGUGGUUCUGGUAUAAAAAAAAUUGUAUGUAUUAGUUCACUUAAAAAUGAUGGGAGCCAUUAUGGUUACUGCUCUAAUGUUUUUUCCUCGUAUGACAUGCAUAGUUUUUUUUACAUGGUUGUUUCCUAAUGUUUUUUUUUUUUCACAAUAUAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

12

LEP:

2.44%

ME_num:

190

MEP:

38.62%

HE_num:

289

HEP:

58.74%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

crown

Tau :

0.43

Avg Expression:

8.18

Tip: OSA-LNCN0547 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.323390256811040.0298301334913524
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.170674126447640.000800617300642812